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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030523 Open in IMG/M |
| Scaffold ID | Ga0272436_1000040 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 289719 |
| Total Scaffold Genes | 334 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 173 (51.80%) |
| Novel Protein Genes | 13 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (23.08%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.9 | Long. (o) | 159.8 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001253 | Metagenome | 736 | Y |
| F006206 | Metagenome | 378 | Y |
| F008668 | Metagenome | 329 | Y |
| F013598 | Metagenome | 269 | Y |
| F017941 | Metagenome | 237 | Y |
| F032102 | Metagenome | 180 | Y |
| F036036 | Metagenome | 170 | Y |
| F061401 | Metagenome | 131 | Y |
| F069514 | Metagenome | 123 | Y |
| F081945 | Metagenome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272436_1000040209 | F081945 | N/A | MFSHSSTEKHSEEFQNHFSQIFDADLSKSSSAASFIHENDESFIETIISFMFYKI |
| Ga0272436_1000040213 | F013598 | N/A | MNFIIDLSDSYDYNAILTVICRLSKERHYISCIIDDEDITAEKTAEMLIQ |
| Ga0272436_1000040214 | F032102 | N/A | MKIADLKKNVSESIYKQVLDVNEIDENCTLLREAIERDEAQCKDIKLKNCRVQNEILYKDSQL |
| Ga0272436_1000040218 | F001253 | GAGG | VTFIKDVMKDVLISSTTSSSNDFFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFNDHYAKKLITHAIYSNLTVQDHMKRFVFMLIIRLSQHQMILEKT |
| Ga0272436_1000040224 | F001253 | N/A | VTFIKDMMKDVLISSTMNSLNDLFALKSLTIECVLFSNKISYSLKSLIDIEAADYSFINELITQNVYDHLQIESLSLIKLKSIRKFNDHYAKKLITHVIYSNLTVQDHMKRFVSMLIIRLSQHQMILEKT |
| Ga0272436_1000040230 | F069514 | GAG | MIEFINNNALFSIIFSISFFLNKDFHSCMSFEFDIIKYKSFHERLQMTKVKNIFEHMNKTLKFACKSLVKT |
| Ga0272436_1000040243 | F036036 | N/A | MLISLIHHLFSCFDQSFMSEDQCLVHLFRYILDSINLQAFVIAFILDDVRVKAHIRMKVLVHEEENQEDD |
| Ga0272436_1000040244 | F013598 | N/A | MNFIINLSDSYDYNAILTVICKLLKERHYISCITDDEDITAEKTAEMLIQ |
| Ga0272436_1000040245 | F017941 | N/A | MKIADLKKNNDQSIYKQVLDANEIDKNCMLLCEAIARDEVQYEDIKLKNC |
| Ga0272436_1000040250 | F000597 | N/A | MSDDSFASESLTIEYVLSSNEISYSLKSLINIEAADYSFIDEVTVQIVYDQLQIKFLTLIKAKSIQEFNDHYAKKLITHVIYLNLTVQDHMIDTASMLITRLDQH |
| Ga0272436_1000040255 | F008668 | N/A | MMKFSDNFNIFSITSMTLFYFNKEFHFRMSFNSDTTDYKTTHERLEARKADDIVIQMKELLSFDHQQLKKTKLIIEVQINKHR |
| Ga0272436_1000040261 | F006206 | GAG | LCKLDEILSKENYFEKLFLIDAHLISQKQSLSLRSLIDSDSVIYTIIHSHLVDKVCEKLKIQSISLIKEKLIKDYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADINHHEVILSKL |
| Ga0272436_1000040262 | F061401 | N/A | LNNDQQVIREIKNKLKRVNDVSKTIFHKVTVVTQSVDHSKSDHLKSCDAILTSVKKADILVESCFICHKSDHSSKKCLNQSTKISAVNKEYDCFDFDSNFDSKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |