NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000045

Scaffold Ga0272436_1000045


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000045 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)284413
Total Scaffold Genes358 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)192 (53.63%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F001951Metagenome612Y
F008668Metagenome329Y
F055319Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_10000451F008668GAGMIEFSDNSNIFSVIAMSSFYFNKDFHLRMSFDSDTTDYEITRQRIETRKINDIVIQMKKLLIFDQQQLEKIKQIIEAQMNKHRRNVIYEVDDQV
Ga0272436_10000452F000597N/AMSDDFFASESLITECVLSSNEISYSLKSLINIEAADYSFIDEVIMQIVYDQLQIKFLTLIKAKSIQEFDDHYVKKLITYVIYLNLTVQDHMIDTASMLIT
Ga0272436_10000455F055319N/AMIEVKMKRLRLVDKIIYIQIFEHDLAQKLNFSCEQQNFFIYTDDVTVINVHDMQSEKLLI
Ga0272436_10000456F001951N/AMMIMTKLKFINSLKNKKDEDEDIVETTVTKMMIFELKKLLINAEIFLTLMNKTMMKTKQD
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