Scaffold Ga0272436

Basic Information
Taxon OID	3300030523 Open in IMG/M
Scaffold ID	Ga0272436_1000048 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030523 Open in IMG/M

Scaffold ID

Ga0272436_1000048 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	271004
Total Scaffold Genes	299 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	149 (49.83%)
Novel Protein Genes	24 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (37.50%)
Associated Families	19

Scaffold Components

Scaffold Length (bps)

271004

Total Scaffold Genes

299 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

149 (49.83%)

Novel Protein Genes

24 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (37.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.9	Long. (^o)	159.8	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.9

Long. (^o)

159.8

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F003820	Metagenome	466	Y
F006206	Metagenome	378	Y
F007840	Metagenome	343	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F019584	Metagenome	228	Y
F021216	Metagenome	219	Y
F028978	Metagenome	189	Y
F032884	Metagenome	178	Y
F036036	Metagenome	170	Y
F037508	Metagenome	167	Y
F048019	Metagenome	148	Y
F059497	Metagenome	133	Y
F061401	Metagenome	131	Y
F069514	Metagenome	123	Y
F081945	Metagenome	113	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000048105	F001253	GAG	VTFIKDMMKDVLISLTTSSLNDFFASKSLTIECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIKPLSLIKLKSIREFDDHYAKKLITHAIYSNLTVQDHMKRFASMLITRLDQHQMILEKT
Ga0272436_1000048115	F017941	N/A	MKIADLEKNIEKSIYKQILETNEIDKNCTLLREVVLKDEAQYKDTKLRDC
Ga0272436_1000048128	F069514	GAG	MIEFVNNNALFSVIFSIFFFLNKDFHSHMNFELDTIEYESSHERLQATKVENISEHMNKILTFACESLVKTRKQMIQQVNKHRKEIDYEVESKMFLNE
Ga0272436_1000048130	F028978	N/A	MKIADLKKKENDESIYQLILEANRINENCVLLREVVLKDEAQYKDTKLRNCRVQNEILYQSNLL
Ga0272436_1000048134	F000597	GAGG	VTFIKDVMKDVLISSTMSSSDDLFASKSLTTEFVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDYTIDITSILITRLDQHQMILEKT
Ga0272436_1000048136	F008668	GAG	MMKFSDNFNTFLTISMISFYFNKDFHSRMSFNSDTTDYKMTRQHIETRKIDDIVIQMSELLIFDHQQLKKIKQITEVQMNKHKRDVIYEVDDQV
Ga0272436_1000048137	F059497	GAG	MSIEDIDRKIVYNTQCKLNVLDVTFIDASTQNLEDIKVKLFLKYQNFLDVFDRAQVDKLSSHHSYDHKIKLTNDVTSSRCRAY
Ga0272436_1000048138	F019584	N/A	MIKAQTTKQIIFAEKSIKATCRIIEMKMTDQSKSRDAVLTSVKENDLLNENCFLCHKSDHTSKECLNRSFRINALNDEFDHSLNFNSESNSKN
Ga0272436_1000048141	F007840	N/A	MINAIERQNNTRRSIESTARLIELLDDLQLIKYASFISINRISDKESSLIARESNQSRESINFQIKQQKQLHLLLSSIALRSISFF
Ga0272436_1000048145	F032884	GAG	MTIRNERVEREECEETKKNESTMTRVERKRLYAQTIDVIDQREDIKQRL
Ga0272436_1000048151	F006206	GAG	LCKLDEILSKENYFEKLFLIDAHLISQKRSFNLHLLINSDLVVYMIIHFNLVDKVCEKLKIQSISLTKEKLIKDYDEKIFKKTITHKILFNLIIESHKKLIVSMLIVDIDHHEVILSKL
Ga0272436_1000048152	F061401	N/A	LNNDQRVIQEIKNKIKCIDNILKTIFHRATVVTQQSFNHLKSDHLKSREVILTNVKEADILVESCFVCHKSDHSSKKCLDQSTRINAVNKEYDCFDFDSNFNSKN
Ga0272436_1000048153	F081945	N/A	MSSRSSIEKRSEEFQNCFSQISDADSLKSRTKSSCAASFLHEDDESFAETIILLVFYEI
Ga0272436_1000048159	F017941	N/A	MKIADLKKNISESIYKQILETNEIDKNCTLLREAILKGEAQYKDTKLRDCRVQNEILY
Ga0272436_1000048164	F001253	GAGG	VTFIKDVMKDMLISSTMSSLNDFFASKSLTTEFVLSSNEISYSLKSLIDIEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDYMKRFVSMLITRLSQHQMILEKT
Ga0272436_1000048165	F037508	N/A	VIFRLEGDADQQIYAKHHVEALSFYQSLSELLKHLKEIYEDQNLIRKCHHKYVALKQLNKPFSSFYSEFTRIFSFLNYDDITLMNDIQNKINNRLQNALSVCLIEFSSLNKLKIFIQDVNNKQ
Ga0272436_1000048173	F048019	N/A	MNEHIFKLFFAQAFAKVLQDEFTVYVLVMINVIKELIVEHQVKAMNNVTSCITNALKAQTLLIKLKEYEDVFLIESADKLSLHEDHDYAIEITAESSYESLYNLLNTELATLKQYLNDVLAKE
Ga0272436_1000048193	F003820	N/A	MKLFSYLDYDNCILMNDLQNKINNRLQNALSVCSKNFTSLTRLRIFLQNVNNKQRVNNQLRSERCTVTVTVIIKVTIVSDKCAATSLSAVTTLIIEYVKSTIFSISESVRSSIICYICKISNHLFKNCFQNKINTSTFHAFTLRLHEIIISKNKKNEKMSFENSEIKN
Ga0272436_1000048195	F021216	N/A	MKRKHHKLKKAFRNHERSDNNHLNDILNEHTESILSCDVIEESDERERK
Ga0272436_100004887	F000597	GAG	VTFIKDAMKKMLISSMISMSDDSFTSESLTIKYVLSSNEISYSLKSLINIEAADYSFINEVIAQIVCDQLQIEFLTLIKAKSIQEFDDHYVKKLITHVIYLNLTVQDHTIDTAFMLIIQLSQHQMILEKT
Ga0272436_100004890	F017941	N/A	MKIADLKKNISKSIYKHILETNEIDENCMLLRKAIARDEIQYKNIKLKNC
Ga0272436_100004891	F013598	N/A	MNFIIDLSDLYDYNVILTIICRLLKERHYISCIIDDEDITVKKTAEMLLQ
Ga0272436_100004893	F036036	N/A	MFISLIYHLLSCFDQSFASEDQCLIHVIKYIFNLSDLQTFANAFILDDVKVKAHMRIKALVHEEESQEDD
Ga0272436_100004897	F013598	N/A	MNFIINFFDLYDYNIILTVICKLLKERYYISCIINDENITVEKIAKMLI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272436_1000048

Overview

Ecosystem & Geography

Associated Families

Sequences