Scaffold Ga0272436

Basic Information
Taxon OID	3300030523 Open in IMG/M
Scaffold ID	Ga0272436_1000095 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030523 Open in IMG/M

Scaffold ID

Ga0272436_1000095 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	206531
Total Scaffold Genes	197 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	92 (46.70%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

206531

Total Scaffold Genes

197 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

92 (46.70%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.9	Long. (^o)	159.8	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.9

Long. (^o)

159.8

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F006206	Metagenome	378	Y
F037508	Metagenome	167	Y
F044227	Metagenome	154	Y
F061401	Metagenome	131	Y
F069514	Metagenome	123	Y
F094626	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000095136	F094626	N/A	MFLNERNIISVKSFKKLNDKMLNSFINLNLIDSSYKLKLSKSMHVHNVFHSDLLCSVVDDFLFNQKNEFSDLIVINDENE
Ga0272436_1000095137	F069514	N/A	MIEFIDNNALFSIIFLTSFFLNKDFHSHMSFKFNVIEYESFCECLQMIKVKNISEHINKTLKFAHESLVKTQEQMMKQVKKT
Ga0272436_1000095139	F044227	N/A	MQLQLKSSDNETCTNALLELIASVIKNVTRCQLLKLLNNHHYHEESQSSCKNDNENEASEAI
Ga0272436_1000095143	F006206	N/A	VKIISLCNLDEILLKENYFDKLFLINAFLILQNELFSLRSLIDSDSVIYTIIHINLVDKVCKELKIQFISLAKEKLIKEYDEKIFKKIITHKMLSKLIIESYKKLTVSMLIADINHHEVILEKS
Ga0272436_1000095154	F001253	GAGG	VTFIKGVMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFNDHYAKKLITHAIYSNLTVQDHMKRFVFMLITRLSQHRMILEKT
Ga0272436_1000095155	F037508	N/A	VIFRLKDDADQQIYAKHHVDALSFYQSLSELLKHLKEIYKDQNLIRKCRCEYVALKQLNKSFSSFYSEFTRIFSFLNYDDITLMNDIQNKINNRLQNALSVCLIEFSSLDKLKIFLQDVNNKQQVNYQLRDEQ
Ga0272436_1000095164	F061401	N/A	LNNDQRVIQEIKNKIKHINDVSKTIFHKATVITQQSFNHSKSDYLKSCNAILTSVKEVNILVESCFVCHKSDHSFKKCFNQSTKINAVNNKYDRFDFNSNFDSKN
Ga0272436_1000095166	F000597	N/A	MKDVLISLMISMSDDSFTSESLTIECILSNNEISYSLKSLIDIKAADYSFIDKVIVQIVCNQLQIKSLTLIKAKLIQEFNDHYAKKLITHVIYLNLTVQDHTIDTVFMLIT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272436_1000095

Overview

Ecosystem & Geography

Associated Families

Sequences