NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000110

Scaffold Ga0272436_1000110


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000110 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)195686
Total Scaffold Genes235 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)130 (55.32%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F013598Metagenome269Y
F017941Metagenome237Y
F037508Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100011012F017941N/AMKIADLEKNVSESIYKQVLDVNEIDENCMLLREAIEKDEAQCEDIKLKNC
Ga0272436_100011013F013598N/AMNFIINLFDSYDYNAILTVICRLLKERHYISCIIDEKDITVEKTAEMLLQ
Ga0272436_10001103F001253GAGGVTFIKDAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIKSLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDHMKRFVSMLIT
Ga0272436_10001104F037508N/AVIFRLEGDADQQTYAKRRVDAFSFYQSLSELLKHLKEIYEDQNLIQKCRCKYVALKQLNKLFSSFYSEFTRIFSFLNYDDIILMNDIQNKINNRLQNALSVCLIEFSSLDKLKIFLQDVNNKQRVNYQLRDEQ
Ga0272436_10001108F037508N/AVIFRLEDDADQQIYAKHHVDAFSLYQSLSELLKHLKEIYEDQNLIQKCRCKYVTLKQLNKFFSSFYLKFTRIFSFLNYDDIILMNNIQNKINNHLQNALSVYLIEFSLLNKLKIFLQDVNNKQ
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