NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000114

Scaffold Ga0272436_1000114


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000114 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)189500
Total Scaffold Genes228 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)129 (56.58%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F008668Metagenome329Y
F013598Metagenome269Y
F017941Metagenome237Y
F036036Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_1000114208F036036N/AMLINLIHHLLLCFDQSFASKDQCLIHIIKYIFDLSNLQMFAKTFILNDVKVETHMKVKVLVHEEEDQEND
Ga0272436_1000114209F013598N/AMNFIIDLSDSYDYNVILTVICKLLKERHYIFCIIDDEDITVKKTAEMLLQ
Ga0272436_1000114210F017941N/AMKIADLKKNINESIYKQILKTNEINENCTLLCKVIARDETQYEDIKLKNC
Ga0272436_1000114213F000597N/AMKDVLISLMMNMSNDSFASESLTIECVFSSNEISYSLKSLIDIKAADYSFINEVITQIIYDQLQIKSLTLIKAKSIQEFDDYYVKKLITNVIYLNLTVQDHMIDTAFMLIT
Ga0272436_1000114218F008668N/AMSFDSDTTDYETTHERLEVRKADDIVIQMKELLSFDHQQLKKTKLIIEVQINKHRRDVTYEVDN
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