NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000149

Scaffold Ga0272436_1000149


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000149 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)168042
Total Scaffold Genes185 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (14.59%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Associated Families14

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F001253Metagenome736Y
F003820Metagenome466Y
F008169Metagenome337Y
F011463Metagenome290Y
F028368Metagenome191Y
F028667Metagenome190Y
F044227Metagenome154Y
F046102Metagenome151Y
F048685Metagenome147Y
F052973Metagenome141Y
F055317Metagenome138Y
F058565Metagenome134Y
F074202Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_1000149102F048685N/AMYQSDKQNIKIDALTRXADFMPRDFDDECIQYQRITILTLNXMKIANLKKNNDQSIYKQILEINEIDKNCTLLREAIARDET
Ga0272436_1000149107F028368N/ALKENYFDKSFLVNALLILQNESFNLCSLIDSDSVVYMIIHINLVDKVCKELKIQPISLTKEKLIKEYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADINHHEVILEKSRINKNEILLNMQINVIIFLNQLNTFISIFLISLNSKHSSXLQLTSFTSISQSKISRMLKQSVSTTIQKESFSIQSINITSFKILLNRSKKNQTEVFTLFMKNIDRKIAYNTQCNLNALNISFIEKTIQNLKAIKVKLSSEYHDFLDVFDRAQLNKLLSHCFYNHKIELISDSTSSHCRVY
Ga0272436_1000149108F055317N/AMFTDEKNSTXKNXSLDIQKKLVMNIDIFSNELYKLSYIHSXLADDVVEVTQVRCNLNCDNFYLTVNELLKKLAQSFHDSDKKDNYCRKYINLIQESKKFSDFFNQFQRLYIYLKYQKNILVINLKNKINSHLRIFXTVQMKSLIKLSDIRNNLIRLNNEHRAVXKIKNKLLKHDDSKIIISKATIAVQSSTSKSDXLKLRSAVLTNIKNADVLIEICFICHKSDHSFKECLNQSIKVNAVDENYDCFELNTESEFKSKN
Ga0272436_1000149112F000597N/AMSMSDNSFASESLTIECVLFSNEISYSLKSLIDIKAADYSFINEVIAQIVYDQLQIKSLTLIKAKSIREFNDYYAKKLITHVIYSNLTV
Ga0272436_1000149113F003820N/AMKLFSYLEYDDCTLINDLQNKINNCLQNALLICLKDFTTLHHLKSFLQSVNNRQRVNYQLRSERCMIIVKVIITSEKRTTLLSAVTTLIIEYVKSTIFSTSESVRSFIICYICKISDHLFKNCFQNKIDTSASCVFTFRLHEIIISKNKENEKMTFFFENNEAKN
Ga0272436_1000149116F058565N/AVNLEDDETMMNHMICNNIDSKIIASNVNSSQENRDVKLKHLRNDKKNVVNVIDLLIKILMLKKEKNKDHSXKEIALKLI
Ga0272436_1000149126F074202N/AMILXNFKMCVYEXSLFTCRKEIYMYVEKCLQLLYCXLRLQSLSLTKLLEKCVSNFMKTVDCKMNCKTIYMSCLLMSSCLLYSDNAFNLALLLNDDFFLKLIISKLRLHVETELNFKEEVILRCSFFTAKDDNLDSSFNLETATNFIKFLXFIIFHNDXLFFFNLFLSVKCDVTRSKXADAENQAFESEVVVDLAVVDFAVINLAVLDNVDNESSLKFENLDCEDDMKRSTSSVSSFFSSDIVN
Ga0272436_1000149132F044227N/AMQLQLKSSDDKIYTYALFELIAFAIKNATRCQLFKLLNNHYYHEESQSSCKNDDENEASEVI
Ga0272436_1000149143F052973N/AMFRDCARLERNVFVTXKKDDVDEQDVDERKECXERKRVLSHIVMILAFA
Ga0272436_1000149144F011463N/AMKLIIEVQINKDKXDITYEVNDXVXLSFRNIKITRLCKDLKDKQLNLYQITAKVNIFYHLHLSVSMKHLYSTFNLKLLQLYSEDSLSEQHSKSLRLIIIEDDEHXEIDNILNFRCYXDXIQYKVKXKDLDKDDKXYYVDKEKFYDSEKVLNEFHKLYSSKSR
Ga0272436_1000149148F008169N/AMKSKSXRLNFKLKKTLLLISSTLSVLESQKISDSSLFTDEKNFIXKNXYEKIQNKLEINVDLFSNEXVKLSYVHSRLFNDAAKITQARREHDCINFYRIVEDFLKELAQLFDDSNKKVNFRREYYNLIQEFKKFSKFYTQFQRLSFYLDYHEKQLIIDLKDKINSRLQFIXVNQLVQSDSLKEIHFYLICLNNDQRVIXKIKNKLKCINDVSKTIFHRATIIIQSVNHLKSDHLKSRDAILTNVKEADILFKSCFICHKSDHSSKKCLDRSTKINAMNKEYDHFNFDSNFDLKN
Ga0272436_1000149152F046102N/ALSQXDHHVERREEIIYREIKEXGKKLVTFIKDMMKDALISSIMSSSDDLFALKSLTIKCILSSNEISYLLKSLIDIEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFNDHYAKKLITHAIYLNLTVQDHIKCFVFMLITQLDQHQMILEKTXMNKIKVTIDMKDDHLQFSSFKAHIKAFIKAHSTVLSSKKIAIEQKSLTSI
Ga0272436_1000149156F011463N/ALKKTKLIIEVQINKHKQNVTYEVDNXVXLSFKNIKTTRLCKDLKDKQLDLYQITVKVSTFYHLHLSVSMKHLHLMFSLKLLRLYSENSLLEQHSESLRSITIENNEYXKINDILNFRRYRDXIKYKVKXNDLDKNDEXYYVDKEKFNDSEKVLNKFHKLYSSKSR
Ga0272436_1000149170F028667N/AMTRDFKSVESXTARLLRSTASRHVSLISFNASVKSQNVAISXNINMSQQLHQXAIDQSNEIIKMLIELKDQRDMTLKLNEQXINIQVNHIKRLDKLEINQMTINTQEETIIELXKKVLSLKKKQRSANQSRSRQFTKSLSHQFIKNHTXRESFTLFNNDHHKSFKFLNSSVFIDEDESTXNSXRIKMNDKLQTNVDHFNNKNICIVYVISRLENNVAEHIFAXHHHDALHSYISIYKLFEHLKEIYDDQNKNRKCRCKYNTLRQAEKSFNVFYFNFMKLFSYLEYDDCTLMNDLQNKINNHLQNALSICLKDFITLHHLKSFLQSMNNKQRVSYQLQSERCMIIIKIIIASEKCITLLSAVTTLIIKYVKLTIFFTSESVRSSIVCYICKTSSHLSKNCSQNKINTSAS
Ga0272436_1000149173F000597N/AMISMSNNSFASESLTTEYILSSNEINYSLKSLIDIEAADYSFINEVIAQIVYDQLQFESLTLIKAKSIQEFDDHYAKKLIIHIIYLNLTVQNYTIDTASMLITXLDLHQMILEKTXMNKISLVIDM
Ga0272436_1000149178F046102GAGGVTFIKDVMKDVLISSTMSSSNDLFASKSLTTKCVLSSNEISYSLKSLIDIEAADYSFIDKLIAQNVCDHLQIKFLSLIKLKSIRKFNDHYAKKLITHAIYLNLTVQDHMKRFIFMLITXLDQHQMILEKTXMNKIKMTIDMKDDRLQFSSFEAHIKASIKAHSTVLSSKKIAIEQKSSIS
Ga0272436_1000149181F001253GAGGVTFIKGAMKDVLISSTTSSSNDFFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYLNLTVQDYMKRFVFMLIT
Ga0272436_100014930F001253N/AMKDVLISSTTSSSNDFFASKSLTIECVLFSNEISYSLKSLIDIKAADYSFIDELIMQNVCDHLQIESLSLIKLKSIRKFNDHYAKKLITHAIYSNLTV
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