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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030523 Open in IMG/M |
| Scaffold ID | Ga0272436_1000205 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 142777 |
| Total Scaffold Genes | 180 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 91 (50.56%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.9 | Long. (o) | 159.8 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001951 | Metagenome | 612 | Y |
| F003820 | Metagenome | 466 | Y |
| F006206 | Metagenome | 378 | Y |
| F017941 | Metagenome | 237 | Y |
| F036036 | Metagenome | 170 | Y |
| F041516 | Metagenome | 159 | Y |
| F044227 | Metagenome | 154 | Y |
| F094626 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272436_1000205142 | F094626 | N/A | VRFFKKLNDKMLDSFQITEFIDSFYKLKLSETMCIHDVFHSKLLCSVVNDSLSDQKMNLRNQ |
| Ga0272436_1000205143 | F036036 | N/A | MLVSLIHYLFLCFDQSFASEDQCLIYVIEYIFNLSDLQTFANAFILDDVRVEAHTKVKALVHEEEN |
| Ga0272436_1000205145 | F017941 | N/A | MKIADLKKNNNQSIYKQILEINKIDENCTLLCEAIARDKTQYEDIKLKNC |
| Ga0272436_1000205149 | F000597 | N/A | MKDVLISSMMSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIEFLTLIKAKSIQEFDNHYAKRLITHVIYLNLTV |
| Ga0272436_1000205150 | F003820 | N/A | MKLFSYLEYNDCTLMNDLQNKINNHLQNALSICLKDFIILHRLKSFLQSVNNKQRVNYQLRSERCMIIVKVIIASEKRATSLSAVTTSIIKYVKSTIFSTSESVRSFIVCYICKISSHLSKNCSQNKINTFASQAFTLRLHEIVISKNKENEKMSSFKDSEAKN |
| Ga0272436_1000205157 | F006206 | N/A | LLQFQFEFRFKKLVIFSKVIKEIEIISLCKLNEILLKENYFEKSFLINAHLIFQNQSFNLHSSIDSDSIIYMIVHSNLVYKVCEKLKIQFISLTKEKLIKDYDEKIFKKIITHKILLNLIIKSYKKLTVLMLIVDIDHHKVILNKL |
| Ga0272436_1000205162 | F044227 | N/A | MQLQLKSSDDETCTYALLELIASAIKNATKRQLLKLSNNHCYHEEFQSSCKNNDENKASEAI |
| Ga0272436_1000205171 | F001951 | N/A | MIMTKLKFIDSSRNEKERDENTVETTVTKVIILKLKELLVDAKTLLTLMSETKKKMIK |
| Ga0272436_1000205175 | F041516 | N/A | MIQRVIHIHEAYNLSFKDHEIIHEKENLSDIEKTLHMLRESILVKEFNLHHFT |
| Ga0272436_1000205177 | F003820 | N/A | MKLFSYLDYDDCTLMNDLQNKINNRLQNALSVCSENFTSLIRLRIFLQDVNNKQRVNYQLRSQLRTVIIKVTIVPDKRAATSLSVTTLIIDYVKPIFSSISESARSSIICYTCKTSSHLFKNCSQNKINTSASHVFILHLHEIIISKNKENEKMSSENSETKN |
| Ga0272436_1000205178 | F000597 | N/A | MKEMLISSMMSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIQEFDNHYAKKLITHVIYLNLTVQDHTIDTASMLITRLDQHQMILEKT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |