Scaffold Ga0272436

Basic Information
Taxon OID	3300030523 Open in IMG/M
Scaffold ID	Ga0272436_1000206 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030523 Open in IMG/M

Scaffold ID

Ga0272436_1000206 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	142025
Total Scaffold Genes	145 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (22.07%)
Novel Protein Genes	15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (6.67%)
Associated Families	14

Scaffold Components

Scaffold Length (bps)

142025

Total Scaffold Genes

145 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (22.07%)

Novel Protein Genes

15 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (6.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.9	Long. (^o)	159.8	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.9

Long. (^o)

159.8

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F008735	Metagenome	328	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F018839	Metagenome	232	Y
F024448	Metagenome	205	Y
F028978	Metagenome	189	Y
F036504	Metagenome	169	Y
F046102	Metagenome	151	Y
F068292	Metagenome	124	Y
F086377	Metagenome	110	Y
F089602	Metagenome	108	Y
F094624	Metagenome	105	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000206104	F024448	N/A	MKDVLISLTMSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHTIDTASMLITRLDQHQMILEKTXMNKIDLVINMQINFLRFSNFTSSQKLIVLFLSHRTITKQKSLTSTHILRRLFTFVI
Ga0272436_1000206111	F068292	N/A	MSHQDTQSAEQRVNQKVEXSSTFKAHSQXESSTLSENKTNYYKFIKLSNSLIFIETDDFIXKTXNIKIADKLNVNANHYSTEKIHIVYVIFRLEDDADQQIYAKHYVDAFSFYQSLSKLLKHLKEIYEDQNLIQKCRCEYIALKQLNKSFSSFYSEFTKIFSFLNYNDIILMNNIQNKINNHLQNVLSVCLIKFNSLDKLKIFLQDVNNKQQFNYQLR
Ga0272436_1000206112	F046102	N/A	VTFIKDMMKDVLISSTMSNLNNLFASKSLTTECVLFSNEISYSLKSLIDIEAADYSFIDELIAQNVYNHLQIESLSLIKLKSIRRFDDHYAKKLITHAIYLNLTNQDHMKRFVFMLITRLDQHQMILEKTXMNKIKMTIDMKDDHLQFSSFKTYIKAFIKAHLTVLSSKKIAIEQKSSIS
Ga0272436_1000206113	F018839	N/A	MMIAKVVTFNRLTSDLYAAVFIIAMFIELKDEAKLTELNDFTILLNEDDFLLSXVMTEEINLFSI
Ga0272436_1000206115	F017941	N/A	MKIADLKKNINESIYKQTLKTNEIDENCTLLREAIARDET
Ga0272436_1000206116	F013598	N/A	MNFIIDLFDSSEYNAILMIICRLSKKEHYISCITDDENITVKKTAKMLIQ
Ga0272436_1000206127	F094624	N/A	MKHYLQVFINYMQNDXAKXLSEVKFIINNASSLITLTSFFLINLSQNSRLNFTFSEFLLENLMFQAQDKLINVKEFIKKMKKLTEHLCDEMLIAQIIYEFNVNLSHYSCFKYFVEDEVXLNACNFSIIHLVIKLNDHNVDLFKIKHVFKNNSLIIELNLSAFMKIHSIFHVTLLNHITSDFLSS
Ga0272436_1000206131	F086377	N/A	MIQHFXDQRQKILILDCDSVQISIVHAKAKFFFKFLNEENRDDHLRATDLNEIFAQIFIQIMTKF
Ga0272436_1000206135	F001951	N/A	MTMIKLKFINSSRNEKERDEDTVETTVTKMMILKLKELLINAKILLTLTNEMMMKIK
Ga0272436_1000206136	F089602	N/A	MKDEXLNFIEILSEKDNDLSEIIDIMLQTVNQXEIFHQRKFFLLIEEIVVVNKVIHVLLQSFTKI
Ga0272436_1000206137	F008735	N/A	MRKIMIIVHVHVLYQTLLSCIQSIFVLFILRYVKKLLKSKSNDNNDRICRRMNDEKRLIVQDLCNDLSYHHKRLRIQFYINXRIENDEXKXDDDIMLSNLILKLLHYMKDFDXIFDHTLSELFNSTLIIDQEIVRXLHLSERVTKXDFNVXKRCRKCRSFIMSKTRLN
Ga0272436_100020683	F028978	N/A	MKIADLKKKENDESIYXLILKVNRINENCILLREIILKDEVQYKDTKLRDCXVQNEILYQDDLLXIFLMSIFK
Ga0272436_100020689	F002432	N/A	MQNDXAKXLSMIEFSENFNIFSIISMTSFYFNKNFHLRMSFDSDTTNYKTTCERLKARKADNIIIQMKELLIFNHQQLKKMKQIIKAQINKHRXNIIYELNDXVXLFFRNIKTTKSCKNLKDKQLEFYQITVKVEIFYHLHLSISIKQLHSMFSLKLLHSCLNDFLSEQHSESFKSLTIENDEHXKIDDILNSRCYQDXI
Ga0272436_100020698	F046102	GAG	VTFIKDVMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVYDYLQIESLSLIKFKSIREFNDHYAKKLITHAIYLNLTVQDHMKRFVFMLITQLNQHQMILEKTXMNKIEITIDIRNDCFQFSDSKTHIDASLTSLSVIKKIAIKQKSLIFT
Ga0272436_100020699	F036504	N/A	MSHQDTQSAKQQVNQKEAHFQXESSTLSDNENENDHHKFIKLSNSLIFIEINDSIXKTXNIKIVDKLNVNANHYSTEKIRIVYVIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIQKCRCKYVTLKQLNKSFSSFYSEFTKIFSFLNYNNITLMNNIQNKINNHFQNALSVCLIEFSSLDKLKIFFQDVINKQQVNYQLRDEQXTVKLIAASKKRFVSSLTSASILTTSYVXLATFFTLESEXSRMSIICFNCKVSNHLSKNCSQLKTSTLTSHAFISCLNEIIMSKEEKKLFTEKLKNEIKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272436_1000206

Overview

Ecosystem & Geography

Associated Families

Sequences