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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030523 Open in IMG/M |
| Scaffold ID | Ga0272436_1000216 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 136782 |
| Total Scaffold Genes | 162 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 86 (53.09%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.9 | Long. (o) | 159.8 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001253 | Metagenome | 736 | Y |
| F013598 | Metagenome | 269 | Y |
| F069514 | Metagenome | 123 | Y |
| F094626 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272436_1000216103 | F000597 | N/A | MSDDSFASESLITECVLSSNEISYSLKSLIDIKVADYSFIDKVIAQIVCDQLQIEFLTLIKAKSIQEFDDHYAKKLITHVIYLNLTVQDHTIDTASMLII |
| Ga0272436_1000216107 | F069514 | GAG | MIKFVNNNALFSIIFLISFFLNKDFHSHMSFELDTIEYESFRECLQATKVENISEHMNKILTFACESLVKTRKQMI |
| Ga0272436_1000216108 | F094626 | GAG | MFLNERNIVTARSFKKLDDKMLDFFINLDLVDSSYKLKLSKTMHVHDVFHSDLLHFVINDFLSDQKNEFLESIMTNDEDE |
| Ga0272436_10002162 | F001253 | GAGG | VTFIKDAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLPLIKLKPIRKFDDHYAKKLITHAIYSNLTVQDHMKRSASMLITRLDQHQMILGKT |
| Ga0272436_100021690 | F001253 | GAG | VTFIKDVMKDVLISSTMSSLNDLFASKSLTTECVLFSNEISYSLKSLIDIEATDYSFIDELIAQNVCNHLQIESLSLIKLKSIREFDDHYAKKLITHAIYLNLTVQDHMKRFASMLIT |
| Ga0272436_100021694 | F000597 | N/A | MSDDSFASESLITEYVLFSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIREFDNHYAKKLITHVIYLNLTVQDHTIDTAFMLIIRLDQHQMILEKT |
| Ga0272436_100021699 | F013598 | N/A | MNFIINLSDSYDYNAILTVICRLSKERHYISCIIDDEDITAEKTAKMLIQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |