NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000239

Scaffold Ga0272436_1000239


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000239 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)131421
Total Scaffold Genes153 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)83 (54.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F048685Metagenome147Y
F065269Metagenome127Y
F098339Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_10002391F003820N/AFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTVVSDKRAATSLSAVMTSIIEYVKSTIFSTSESVRSSIVCYICKISDHLFKNCSQNKINISTSHAFTLRLHEIIISKNKENEKMSSFKDSEAKN
Ga0272436_100023913F065269N/AMTRSTELESKSVSTTHYETQDAEKESLLSQNQTASEEENTNASLNIEEENMNVLLFDHEIIKISISTELNA
Ga0272436_10002392F000597N/AMSDDSFASESLITECVLSSNENSYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHAIYSNLTVQDHTIDTASMLITRLDQHQMILKKT
Ga0272436_10002397F048685N/AMYRSDKQNIKIDALTRRADFVLRDFDDERVQYQRTTILTSNRMKIVDLEKNNDQSIYKQILETNEIDENCMLLREAIARDEAQCKDIKLKNCRIQNEILYKDSQL
Ga0272436_10002399F098339N/AMIEFVDNNVLSSVIFLTLFFMNKSFHSRMSFDSDIIKYESIRERLQIDQVKNISEQMNKTLIFAHEALIKTRKQIMNQANKHRKKINYEIESKMFLNE
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