NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272436_1000258

Scaffold Ga0272436_1000258


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000258 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)128423
Total Scaffold Genes143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)89 (62.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F001253Metagenome736Y
F003820Metagenome466Y
F017941Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_1000258135F017941N/AMKIADLKKNVSESIYKQVLDVNEINENCTLLREAKIRDEAQCKDIKLKNC
Ga0272436_1000258138F000597N/AMKDVLISSTMSMSDNSFASESLTTECVLSSNEISYSLKSLINIKAADYSFIDEVIAQIFCDQLQIESLTLIKVKSIREFDDHYAKKLITHVIYLNLTVQDYTIDTAFMLITQLNQH
Ga0272436_1000258139F003820N/AMKLFSYLEYDDCTLMNNLQNKINNRLQNALSICSKDFIILHHLKSFLQSMNNRQRVNYQLRSERCMIIVKVIITPEKRATSLSAVTTSIIKYVKSTIFFTSESVKSSIVCYICKISDHLFKNCSQNKINTSTSCVFISHLHEIVISKNKENEKMTFFFENNEAKTRDFHQRCNERRVNFFNNEHVRQFFCF
Ga0272436_1000258142F001253GAGGVTFIKDVMKDVLISSTTSSSNDLFASKSLTIECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLPLIKLKSIREFDDHYAKKLIIHAIYSNLTVQDHMKRFVSMLITRLDQHQMILEKT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.