NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000270

Scaffold Ga0272436_1000270


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000270 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)125338
Total Scaffold Genes128 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (13.28%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (16.67%)
Associated Families15

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F010214Metagenome306Y
F024448Metagenome205Y
F028667Metagenome190Y
F029296Metagenome188Y
F036504Metagenome169Y
F040408Metagenome161Y
F044227Metagenome154Y
F049323Metagenome146Y
F051591Metagenome143Y
F064252Metagenome128Y
F075494Metagenome118Y
F084912Metagenome111N
F094622Metagenome105Y
F104136Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_1000270110F049323N/AMMKEMNEESAEQTRRSAEDDSKKCARFKLGITSXLALIKLIRIKSELXSIQACS
Ga0272436_1000270126F104136N/AMIFSIRLTQIFSESXSMNKLXIXMNSSTSACKSTFNXRNXMLNQLSRHQRLKSLALLLASQQXSLLRSQLQSLHEKNSEYQTLILLERSCLKKNFASNARSQNIEHATVLSQLRCTKLQRIXKTTCFHQSNDXEQYTHILLHQHVXXFI
Ga0272436_100027016F064252GAGMIINTLKEINKYYXEKMLNLKNKLKEVLHSMNQSQSHQSTESQVSMKSLSHQSIKNHTRCKSFTLFNNDHHKSFKFLNSSVFINEDELTXNSXKIKIDDKLQANVNHFIDETICIVYMIFRLEDDAAEHIFAXHHHDALHSYISIYKLLKHLKEIYKNQNKNQKCCCKYNALKQADKLFNVFYFDFMKLFSYLDYDDCTLMNDLQNKINNRLQNALSVCLEDFTSLHHLKIFLQDVNNKQRVNYQLYSQLRTVIIKVTVVSDKCAVTSLSMITLIIDYVKFILSFISESARSFIICYTCKISSYLFKNCSQNKINTSAFYAFISCLHEIIISKNKKNEKMFSFKDSETKN
Ga0272436_10002702F010214N/AVSVLFIYDASSLLCSSLMIFYTRMFQFNLQFKDKKRFLCIRDVHDCNVRRTVFSYSMIIIHYAEKYVMKERCTRXKDKVXLYXVTLFFFXFDLCHVDVEXIVSINVQSQSFNDXLXSIEENAFXSFFCTLDFSRR
Ga0272436_100027035F094622N/ALKQRVYLNDSDSRNDVTAIAMRMNXKLNKRLRELTLIITHHDELKKLVAKIKHLANVVITNQEYHEKIYKVYNDSQTFLKIMKVMILTKDQTRLQQVQVMHESIQS
Ga0272436_10002704F044227N/AMQLQLKSSNDETCTHALLELIAFAIKNAMKHQLLELSNNHHYHKESQSSCKNDDENKAFKAI
Ga0272436_100027050F028667N/AMTHDFKSVESXTACLLKSTASRRVFIISFDVSARFQNVAISXNINMSQQLRQXTINQSDEIIKMLIELRNQXNMTLKLNKQXIDVQVDHIKRLDELEINQMTIDTQEETIIELREKVLSLKKKQRSTNQSRSRQSTESRVSTKSLLRQFIENHTXCKSFILFDNDSHKSFKFLNSSVFINEDESTXDSXRVKMNDKLQTNVDHFNNENICIVYVISRLENDAAEHIFAXHHHDASHSYILIYELFEHLKEIYDELNRNRKCRRKYNALKQAEKSFNVFYFDFMKLFSYLEYDDRTLMNDLQNKINNRLQNALSICSENFTSLTCLQIFLQDVNNKQQVNYQLRSQLCTVIIKVTVVSDKCVATSLSVITLIIDYVKSILSSISESARSSIICYTCKISNHLFKNCSQNKINTSASHAFTSCLHEIVISKNKKNEKMSSFKDNEAKN
Ga0272436_100027058F024448N/AMKKMLISSTTSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYLFIDKVIAQIVCDQLQIKSLTLIKAKSIQEFDDHYDKKLIIHVIYLNLTVQDHTIDTAFMLITRLNQHQMIFKKTXMNKIDLVINMQIDFLQFSNFILNLNSIVLLTSNKTTTKQKSLTSTHILKRSFTIFQLSLKSFSFSQFNEKSVKLIKQLKSRDVTLTNVKISKSTSDSTNIAMIRTATYRMLVK
Ga0272436_100027062F064252GAGMTINTQEKIIIELQEKVLSLKKKQRSANQSRSRQSTESRVSTKSLSRQFIKNHTRCESFILFNNNHHKSFKFLNSSVFIDEDESTXDSXRVKMNNKLQTNVDHFDNENICIVYVISRLKDDAAEHIFAXCRHDALHSYISIYKLFEHLKEIYDELNRNRKCRHEYNALRQAEKSFNVFYFDFIKLFSYLKYDDRTLMNDLQNKINNRLQNALSICSENFTSLTCLQIFLQDVNNKQQVNYQLRSQLCTVIIKVIVVSDKCVATSLSVMTLIIDYVKSILSSISESARSSIICYTCKISNHLFKNCSQNKINTFASYAFTFCLHEIVISKNKKNEKMSSFKDNEAKN
Ga0272436_100027063F024448N/AMSMSDDSFASESLTIECVLSSNEISYSLKSLINNEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIQEFDDHYAKKLITHVIYLNLTVQDHMIDTAFMLITXLDQHQMILEKTXMNKIDLVIDMQINFLRFLNFILNLKSIVLLTSNKIITKQKSLTSTHILKRSFTISQLSLKSFSFSQFNEKSVKLIKQLKSRDVTLTNVKISKSTSDSTNIAMIKTATCRMLVK
Ga0272436_100027068F044227N/AMMQLRLKPSDDKTCIYALFELIAFVIKNVIKHQLLKLLNNHHYHEEFQSSCKNDDENKTSEVI
Ga0272436_100027074F036504N/AVIFRLEDNADQQIYAKHHIDAFSFYQSLSKLLKHLKEIYEDQNLIXKYHCKYVALKQLNKSFSSFYSEFTRIFSFLNYDDITLMNDIQNKINNHLQNMLSICLIKFSSLDKLKIFLQDVNNKQQVNYQLHDEQXTVKSIAASKKLFVSSLTSALVLTTSYVQLATFFILESEXSRMSIICFNCKVLSHLSKNCFQLKTSTSTSHAFISCLNEIIMLKEEKKLFTEKLKNEAKN
Ga0272436_100027075F000597N/AMMKDVLISSTMSSSDDLFASKSLTTECVLSNNEISYSLKSLINTEAVNYSFIDELIAQNACDHLQIKSLSLIKFKSIREFNDHYAKKLITHAIYLNLTV
Ga0272436_100027084F029296AGCAGMNKHRRDVIYEVNDQVXLVFENIKITRSCKDLKDKQLNLYSITVKVEIFYRFQLSRSMKHIHSVFSSKCLQSSLNNLLLKQHSEFFKSMIIEENKKHXKVDDILNFRQYKERLQYKVKXIEINHDDEXYYVDKEKFNDLKKVLNEFHKLYLNKLH
Ga0272436_100027088F084912N/AMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDYTSKECLNRSFRINTLDDEFDYSLNFDSESDSKN
Ga0272436_100027092F075494N/AMINDVKKTFVHSINERKYSAKHVKDRLQDKIYCTXVINKVKKMFVHNVNENMSMYSAMHVRSMLLRIMILVVQKTHLDKVRFLRSRISQSESENLRKHDDEMLTYRNHNVTEKQLNSVAETVDCKQLISYTIVKVLTIYEIIYNFSSKFIVELIKILQ
Ga0272436_100027094F040408N/AMYNYELIFDIYIENDAMKEEVSAAKKHVEMLQNVQNMLMQXX
Ga0272436_100027095F051591N/AMLDAIALYLKYQSNRVISLRIIMTDLDLLSCTSRKDKTDSDLIRNTVLLXNNIVLCTIFKCKRVXFQFLCQYAVFCAVLKLIDDLFFSCEFALXFINQIIIXIDDSFFCVDELSFRCRFXSAXAXKISIFDFXLATQSSVKLLSRMKACFDHTIVLYNLLIDLIYHMLR
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