Scaffold Ga0272436

Basic Information
Taxon OID	3300030523 Open in IMG/M
Scaffold ID	Ga0272436_1000282 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030523 Open in IMG/M

Scaffold ID

Ga0272436_1000282 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	123443
Total Scaffold Genes	125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (15.20%)
Novel Protein Genes	15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

123443

Total Scaffold Genes

125 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (15.20%)

Novel Protein Genes

15 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.9	Long. (^o)	159.8	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.9

Long. (^o)

159.8

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F028368	Metagenome	191	Y
F036035	Metagenome	170	Y
F037509	Metagenome	167	Y
F038008	Metagenome	166	Y
F041516	Metagenome	159	Y
F049323	Metagenome	146	Y
F057010	Metagenome	136	N
F057011	Metagenome	136	Y
F066295	Metagenome	126	Y
F076668	Metagenome	117	Y
F083460	Metagenome	112	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000282113	F057011	N/A	LKENYFEKSFLINTSFIFQSNSFSLRSLIDSNFVVYTLIHDKLVNKVCQKLEIQFILLAKEKLIRDYNEKLVRKTITHKILLNLMIKSHKILTMSMLIADIKHHEAILSKLXMNKNEILLNMKHDTIVFSDQLNISISIFLILSNTKHSSXSRSTLISSAAYSKTSKMLKHSVSFIQKESFSIQNINVVSF
Ga0272436_1000282116	F037509	N/A	MILISIFIQIHLIDNKTSIKKFVYLMIDNIERQNNIKKSIKSTRIYDHVIAREFIAQSVTSVQID
Ga0272436_100028215	F036035	N/A	MKDDVMQRKYHELEKASRNHECDNSDHLNDTFNKHTESISDCDIIKKLDEKKRK
Ga0272436_100028220	F083460	N/A	MQLQIKSSDNQAYSDALLELNASSIKYVTRHXLHKLLNHHFNHEEFQDNNENDDENKVAEAV
Ga0272436_100028223	F036035	N/A	MKDDAMQRKHHELEKASRNHERDNSNHSNDTFNKHIKLISDCDVIEELNERERK
Ga0272436_100028224	F038008	N/A	MNQSHFYTMILXSKSLKIVIVANKKMSIRQHNLDMFALKQRVYLNDNDSKDNVTAIVMRMNXKLDKRLRRSTLIITHHDELKELIMKMKHFADVETANEECHEKIYKVYSDSQTSLKTVKVMISTKD
Ga0272436_100028232	F076668	N/A	MTCLLLTSSFLAYASACKTSKSSMHSTDHYAIKETSVFKSTTTTKKIMHMSNALFTDILMLCNRKDTTNQTLLRCMKFENIRRLQKISFSKXSLKDXLKRLCMIMLKQTCYNMIFAFNALSXVFFKKSLKTLXFSLXKVSALLFHIITLVVEFSLTFCSMQTSTXXQFMSNVSSFKIKIXDLXRISXXILMSCFSRQTRKCLSSSVR
Ga0272436_100028237	F000597	N/A	MISMSDDSFASESLTTECVLSSNEISYSLKSLINIEAADYLFIDEVIAQIFCDQLQIELLTLIKAKSIQEFNDHYAKKLITHVIYLNLTV
Ga0272436_100028238	F005901	N/A	LHSYILIYELLEHLEEIYENQNKNRKCCHEYNALRQANKLFNVFYFDFMKLFSYLDYNDCILMNDLQNKINNHLQNALSVCFKDFTSLHHLKIFLQDVNNKQRVNYQLRSQLCTVIIKVTVVSDKRAATSLSAVTTLIIEYVKSTIFSISESVRSSIVCYICKISDHLFKNCFQNKINTSASXAFISHLHEIIISKNKENEKMSSFEDSETKN
Ga0272436_100028243	F028368	N/A	LKENYFEKSFLIDAHLIFQKXSFSLRSLIDSNSIVYTIIHFNLVNKVCKKLKIQFISLTKEKLIRDYDEKIFKKTITHKILLNLIIKSHKKLTVSMLIVDINHHEVILSKLXMNKNEILLNMXNNIIVFFNQLNTFISIFXIFFNSKHSSXSXSSLFSSITQTKIFMMLKRLILIIAQKESFLIQNINIISFKTLLNHSKKNKIKVFALFMMNINRKITYNTQCNLNVLNIFLINEMT
Ga0272436_100028244	F066295	N/A	LLFTDEKDSIXENXYEKIQNKLEINIDLFFNEXVKLSYIHSRLFNDAAEIIQAKCKQDCVNLYKIINDFLKELAQLFNDSNKKVNFCKKYYNLIQEFKKFNEFYTQFQRLFFYLNYHKKQLIIDLKDKIHSHLQFIXVDQLVQSDFLKEIHFYLIHLNND
Ga0272436_10002828	F041516	N/A	MIQKIIHIHEAYNSSLRNHEIIHEKENLSDIKKMLYMLRESILVKDFNLHHFTXKESFYS
Ga0272436_100028293	F000597	N/A	MSMSDDSFASESLTTEYVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIESLTLIKAKLIQEFNDHYAKKLITHAIYSNLTVQDHMIDTASMLIIQLNQH
Ga0272436_100028296	F049323	N/A	MMKEMNEESAEQREEVLRMTRRVQQRCARFKLDIASXLALIKLIRVRSELXSIQACS
Ga0272436_100028298	F057010	N/A	MSRFFKERFEASFFIVEDNDSFAEIMTPSMTMKALKKRCEELKARLQAREITLSSLIYFERSRFQKILDSSLFTDEKNSIXKNWYEKVQNKLKINVDLFSSERVKLSYVHFRLFDDAAEITQSRRERDCFNSYKIVDELLKELSQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTSFQRLFFYLDYQEKQLIVDLKNRINSRLQFAXVTQLIQLNTLKEIRFYLIQLNNDQRAIXEIKNREAMIKAKTTKQIIFAEESVKATHRIIETKMTDQSKSRDAVLTSVKENDLLIENCFLCHKSDHTSKECSNRSFRINALDDEFDHSLNFNSESDSKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272436_1000282

Overview

Ecosystem & Geography

Associated Families

Sequences