NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000286

Scaffold Ga0272436_1000286


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000286 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)121750
Total Scaffold Genes121 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (44.63%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F006206Metagenome378Y
F013598Metagenome269Y
F018839Metagenome232Y
F021452Metagenome218Y
F025887Metagenome199Y
F033264Metagenome177N
F036036Metagenome170Y
F044226Metagenome154Y
F061402Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_1000286100F013598N/AMNFIIDLSDSYDYNAILTVICRLLKERHYIFCITDDEDITAEKTAEMLIQ
Ga0272436_1000286104F000597N/AMKDVLISSTMSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLITRLDQHQMILEKT
Ga0272436_1000286110F006206N/ALCKLDEILLKENYFEKSFLIDAHLISQKRSFSLRSLIDSDSVVYTIIHFNLVDKVCEKLKIQSISLAKKKLIRDYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADIDHYEVILSKL
Ga0272436_1000286114F044226GAGMMKFNDNFNIFSITSMILFYFNKEFHLRMSFDSDTTDYKTTCERLEARKTDDIVIQMKELLSFDHQ
Ga0272436_1000286116F018839N/AMMIAKVVTFNHLTSDLYAAISIIAMFIESKDEAKLTELDDFMILLNEDDFSLSQVMTKEINLFST
Ga0272436_1000286118F061402N/AMIEFIDNNAISTSIEQSTFFLNKNFHFHMSFDSNSIEYEITQARIEADKAKNIFEHMK
Ga0272436_1000286120F025887N/AMFDDSFDFKSFTVDVILNSLEKIFRSLALINTEVTDMTFIDESLMSKLCECFDIQSISLLKSKSI
Ga0272436_100028676F061402N/AMIEFINNNAISLSIEQSMFFLNKSFHSHMSFDLNSIEYEIIQARIEADKAKNIFEHMK
Ga0272436_100028680F021452N/AMFDNSFDFKSFTVDVILSSLEKIFRFFALINTEVTDMTFIDKFLMSKLCERFDIQSISLSKSKLIQLYDEIFNRKLITHALYTLIIIQEHKNEMMSLLITCLDQHKIIIENF
Ga0272436_100028683F006206N/AVKIISLCNLDEILSKENYFDKSFLVNALLILQNESFSLCSLIDSNSVVYMIIHINLVDRVCKELRIQSISLTKEKLIKEYDEKISKKTITHKILSNLIIESHKKLTVSMLIADIDHHEVILEKS
Ga0272436_100028692F033264N/ALIDIEATDYSFIDELIVQNIYDHLQIEFLSLIKLKSIREFDDHYAKKLITHAIYSNLTVQDHMKRFVFMLITRLDQHQIILEKT
Ga0272436_100028694F018839N/AMMIAKVVTFNHLTSDLYAAVFIIAMFIELKDEAKLIKLDDFTILLNEDDFSLS
Ga0272436_100028699F036036N/AMLISLIHHLFSCFDQSFTSEDQSLVHLFRYILDSIDLQAFASAFILDDVRVKAHTRMKVLVHEEESQEDD
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