NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000301

Scaffold Ga0272436_1000301


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000301 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)119494
Total Scaffold Genes166 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)90 (54.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F013598Metagenome269Y
F032102Metagenome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100030186F013598N/AMNFIIDLSDSSEYNAILTIICRLSKKRHYISCITDDEDITVKKTAEMLIQ
Ga0272436_100030187F032102N/AMKIADLEKNISESIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNCRVQNEILYKDSQL
Ga0272436_100030192F000597N/AMKEMLISSTMSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIQEFDDHYAKKLITHVIYLNLTVQDHMIDTASMLITRLNQHQMILEKT
Ga0272436_100030193F003820N/AMKLFSYLEYDNCTLMNDLQNKINNRLQNTLSVCSENFTSLTRLQIFLQDVNNKQRVNYQLRSQLCTVIVKVTVVSDKCIATSLSVMTLIIDYVKSILSSISESARSFIICYTCKILNHLFKNCFQNKIDTSASCAFTLRLHEIVISKNKKNEKMSSFEDSEAKN
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