Scaffold Ga0272436

Basic Information
Taxon OID	3300030523 Open in IMG/M
Scaffold ID	Ga0272436_1000346 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030523 Open in IMG/M

Scaffold ID

Ga0272436_1000346 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	110246
Total Scaffold Genes	113 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (28.32%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

110246

Total Scaffold Genes

113 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (28.32%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.9	Long. (^o)	159.8	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.9

Long. (^o)

159.8

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F003820	Metagenome	466	Y
F006206	Metagenome	378	Y
F007840	Metagenome	343	Y
F017941	Metagenome	237	Y
F028667	Metagenome	190	Y
F033266	Metagenome	177	Y
F044226	Metagenome	154	Y
F048685	Metagenome	147	Y
F074203	Metagenome	119	Y
F078020	Metagenome	116	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000346109	F048685	N/A	MYXSDKQNIKIDALTRXADFMSRDLDDECIQYQRTTILTLNXMKIADLKKNNDQSIYKQILETNEIDENCALLREAIARDEAQYEDIKLKNC
Ga0272436_1000346111	F028667	N/A	MTRDFESVESQTARLLKSIANRRVFLISVDASAKSQNVAISXNINTNQQLRQXTIDQSDEIIKMLIELRDQXDMTLKLNEQXIDVQVDHIKRFDELEINQVTIDTQEEIIIELREKVLSLKKRQRSANQSRSQQFMKSQASIKNYTRQKLFTLFDNDYHKFFKFSNSFIFTDEDESTXNSXRIKIDDKLQTNVNHFDNENICIVYVISRLENDAAEHIFAXRXHDALHSYISIDELFEHLKEIYDELNRNQKCRREYNALRQAEKSFNVFYFNFMKLFSYLEYNNCTLMNDLQDKINNHLQNTLSVCSKNFTSLAHLRIFLQDVNNKQRANYQLRSQLCTVIVKVTVVPDKCAATSLSVTTLIIDYVKSIIFSISESARSFIICYTCKILSHLSKNCSQNKINISDFQAFTLRLHEIIISKNKENEKMFSFKDSEAKN
Ga0272436_100034641	F033266	N/A	MFSHSFTEEHSEEFQNRFSQIFDADLLKSSSAASFLHEDDESFAKTIILFIFYEIXKTXSLVLDKETDQLYELNKQ
Ga0272436_100034644	F006206	GAG	LCKLDEILLKENYFEKLFLIDAHFISQKQSFSLRSLIDNDSVIYMIIHFNLVNKVCKKLKIKSISLTKEKLIKDYDEKIFKKIITHKILFNLIIESHKKLIVLMLIADINHHEVILSKF
Ga0272436_100034646	F017941	N/A	MKIADLKKNISELIYKQILETNEINENCTLLREAILKDEAQYEDTKLRNC
Ga0272436_100034648	F007840	N/A	MIDAIERQNNTRESIESTARLIELLDDLQLIKYTSFISINRISDKESSLIARESNRSRESINSQIKQQK
Ga0272436_100034650	F078020	N/A	MRFFFDHLISAXKDAIFTLNIEKFFFEAVEVSRXSTLRAELIEEFDDRDHFEYEALTDIEKTEMKASNXFEKTITSFHISSSISFLFIQNFSNMTSXXFISAINIETVNFLXLLTVRLSRILXVMIFFVSFSSYSLINFSLASHMSXISSFXNIXSTSFVXIKM
Ga0272436_100034661	F003820	N/A	MNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTIVPDKCAATSLSVTTLIINYVKSILSSTSESARSFIICYTCKILNHLFKNYSQNKIITFAFHVFISRLHEIVISKNKENEKMSSENNEAKN
Ga0272436_100034663	F074203	N/A	MLFQTNLIMFSCSSTEEHSEKFQTRFSQISDADLLKSQTKSSSAASFIHEDDESFTETIISFVFYEIXKTRSLALDKETDXLYELNKQQEDEIKELKTRLQTKENTSSDFIYSECSRSQKIPDSSLFTDEKNSIXKNXYGKIQNKLKINVDLFSNKRVKLSYVHSRLFNDAAEITQARRERDCVNFYRIVEDLLKELTQLFNDLNKKVNFHREYYNLIQESKKFNEFYT
Ga0272436_100034672	F001253	GAG	VTFIKDVMKDVLISSTMSSSDDFFVLKSLTTECVLSSNEISYSLKSLIDIEAADYSFIDELIAQNVCDHLQIELLSLIKSIREFDDHYAKKLITHAIYLNLTVQDHMKRFISMLITRLS
Ga0272436_100034678	F044226	GAG	MMKFNDNFNIFLITSMIFFYFNKEFHSXMSFDSNMIDYKTTCERLEVRKANDIVI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272436_1000346

Overview

Ecosystem & Geography

Associated Families

Sequences