Scaffold Ga0272436

Basic Information
Taxon OID	3300030523 Open in IMG/M
Scaffold ID	Ga0272436_1000371 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030523 Open in IMG/M

Scaffold ID

Ga0272436_1000371 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	104211
Total Scaffold Genes	104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (23.08%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (8.33%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

104211

Total Scaffold Genes

104 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (23.08%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (8.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.9	Long. (^o)	159.8	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.9

Long. (^o)

159.8

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F008668	Metagenome	329	Y
F011463	Metagenome	290	Y
F017941	Metagenome	237	Y
F028667	Metagenome	190	Y
F029296	Metagenome	188	Y
F032102	Metagenome	180	Y
F036036	Metagenome	170	Y
F039410	Metagenome	163	Y
F083460	Metagenome	112	Y
F094626	Metagenome	105	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000371102	F011463	N/A	MKELLNFNHQQLKKTKLTIEVQINKHRXNVTYEVDDXVXLSFRNVKITRLCKDLKDKQLNLYQITAKVSIFYHFHLSVSMKHLYSMFSSKLLRLYSEDHLSEQHSESLKSITIKDDEHXKIDDILNFRRYQDXIQYKVKXKNLDRNDEXYYVDKEKFDDSEKVLNEFHKLYSSKSR
Ga0272436_1000371104	F028667	N/A	MTRDFESVELXTAHLLRSTVSKXVSLISFDASVDVKNVDILXNIKTEEQLRQXAHDQLNEIIKMLNELKSQRDTTLKLNEQXIIVQVKHDKRLNQLEIKQMIIDTLEETNKHYQEKMLNLKNKLKEVLHSTNQSQSRQSTESQVSIKSLSCQSIENHTRRESFTLFNSDHHKSFKFLNSSVFIDEDESTXDSXRIKMNDKLQTNVDHFIDETICIVYVILRLEDDAAEHIFAQHHHDASHFYILIYELFEHLKEIYNELNRNRKCCCKYNALRQADKSFNVFYFDFMKLFSYLNYDNCTLMNNLQNKINNRLQNALSVCSKNFTSLTRLRIFLQNVDNKQRVNYQLRNERRTIIIKVMIISDKRIATSLSAMTTLIIEYVKSTIFSTSESVRSSIVCYICKISSHLSKNCSQNKINTSAS
Ga0272436_100037113	F029296	AGCAG	MNKHKXDIIYEVDDQVXLVFENIKITRSCKDLKDKQLDLYSIIVKVKIFYHLQLSRSMKHIHSVFSSKYLXTSSNDSLSEQHSELSRLMIIEENEKHXEVDDILNFRRYRERLQYKVKXIKIDHDDEXYYVNKEKFDDLKKVLNEFHKLYLNKSH
Ga0272436_100037116	F094626	N/A	MFLNEQNIITARSFKKLNDKMLDSFQIIESVDSFYKLKLSETMCIHDVFHSELLHSVINDSLSD
Ga0272436_100037117	F036036	N/A	MLISLIYHLFSCFDQSFMSENQSLVHLFRYISDSIDLQAFANAFILNDVKVEAHMRMKVLVHEEEDQEDDXXQDVIVNKLNHE
Ga0272436_100037118	F017941	N/A	LNXIKIADLEKNISESIYKQILKTIEINKNCTLLREAIARDETQYEDIKLKNCXT
Ga0272436_100037124	F039410	N/A	MISLLMFIINIAKNSILFFFEXFNNVLNEATFMLXIKNDSFXAVIETSHLNIIEILVXVIEENEVDHDQLKCFELKEIKKIEMKVFNXFEKMMTSICIFSNISFLFIHDFSNMTSXXLMSAINIETVNFLXLSMMRFNRILXMIVFLNIFSSYSFINFSFVNDIDXIFSSLHTLLTRLICMII
Ga0272436_100037137	F002432	N/A	MSFNSDITNYETICERLEVRKADDIIIQMKELLNFDHQQLKKMKLTIEVQINKHKRNITYKVNDXIXLSFRNIKTTRLCKDLKDKQLNLYQITAKVNIFYHLYLSISMKHLHSMFSLKLLXSYSENFLSEQHSKSLRLITIKDDEHXKIDDILNFRRYXDQIQYKVKXKDLDKNDEXYYVDKKKFNDSEKVLNEFHKLYSSKSR
Ga0272436_100037147	F008668	N/A	MSFNSDITNYETICERLEVRKADDIVIXMKELLSFNRQQLKKTKLIIKVQINKHRXNVTYEVSDXV
Ga0272436_100037180	F083460	N/A	MQLRMKSSDSQAYSDALLKLNASLIKYAMRHXLHELLNYHLNHEESQSNSENDDENEAAEAV
Ga0272436_100037187	F032102	N/A	MKIADLEKNIDESIYKQILETNEINENCTLLREAIARDEAQYEDTKLKYCQVQNEILYRDDLL
Ga0272436_100037198	F039410	N/A	MSFKFXVISLIEKTFKAFKLHXVLYAIFLLMFIMNKAKTLILFFFEQFNSVLNEATFMLXIKNDSFXAVIETSCLSIIKILVXVIEESEVDDSQLECFELSEIEKIKIEVFNXFEKTMTLFHIFSNISFLFIQSLLNMTSXXSISAINIDTVNFLXLSTMRLSRILXMMIFLDIFSS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272436_1000371

Overview

Ecosystem & Geography

Associated Families

Sequences