Scaffold Ga0272436

Basic Information
Taxon OID	3300030523 Open in IMG/M
Scaffold ID	Ga0272436_1000373 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030523 Open in IMG/M

Scaffold ID

Ga0272436_1000373 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	104024
Total Scaffold Genes	92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (19.57%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

104024

Total Scaffold Genes

92 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (19.57%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.9	Long. (^o)	159.8	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.9

Long. (^o)

159.8

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008169	Metagenome	337	Y
F018839	Metagenome	232	Y
F021026	Metagenome	220	Y
F032884	Metagenome	178	Y
F046102	Metagenome	151	Y
F061399	Metagenome	131	Y
F074203	Metagenome	119	Y
F094625	Metagenome	105	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100037313	F032884	N/A	MTIRNKRVECKKCEETKKNESMMMRIEXKHLYVQTINVIDQXEDIKQXLXSDYM
Ga0272436_100037323	F074203	N/A	MSSHLFTEERSKKFRNRFSQISDADSSKSRTKSSSAASFIHEDDESFTETIIFLVFYEIXKARSLVLDKETDXLYKLDKQQEDKIKELKTRLQTKENTSSDFIYSERSRSQKIPDSSLFTDEKNSIXENXYGKIQNKLEINVDLFSNERVKLSYIHSRLFDDAAKITQVRCKRDCVNLYKIVEDFLKKLAQLFDDSNKKVNFRRKYYNLIQEFKKFSEFYT
Ga0272436_100037348	F018839	N/A	MMIAKVVTFNHLTSNLYAAVFIIAMFIELKEKDLTELNDFTILLNEDDFLLSQVMIEEINLFSI
Ga0272436_100037349	F046102	N/A	VTFIKDAMKDVLISSTMSSSDDLFASKFLTIECVLFSNEISYSLKSLIDIEAADYSFIDELTAQNVYDHLQIESLSLIKLKSIREFDDHYVKKLITHTIYLNLTVQDHMKRFVFMLITQLDQHQMILEKTXMNKIKMTIDMKDDHLQFSSFEAHIKAFIKAHSTVLSSKKIAIE
Ga0272436_100037377	F061399	N/A	LHFLSVFKHRXRDVFMNYVNSLSLSIFMNITYKYILIFVDCLIKMKHLVLITSMKVEEIINCFYAHVXKHHDLLEFFMSNRDTQFIFNVXKHMCKMLKINVKLSTMYHSEINDQIKRINAVMKHYLQVFVNYMQNDXAKXLSEVEFIVNNASSLITLTSFFLINSSQNSCLDFELFKSLFKNLMFQAQDKLINVKEFIKKMKKLTEHLHDEMLIAQIIYEFHVNLSCHSCFKYFVKDEVXLNAHNLSITHLAVKLNDHNVDFFKIKCVFKNNSLVIELNLLVFMKIHSIFHVILLSHIVNDSLSNQRQKSQEFVVIKNDKRFXYVNSILNFKHDKRYNSFLLKYYINXKDHFSTXKSFNLLNNCEQMLNEYHLINSVVEESHVLSCVMF
Ga0272436_100037381	F008169	N/A	MQSSFDYKNHNKESSXITQESNRLIDSMIKNLRCLLENQSNQSTNKSHLLCXRLNIISYVFLFQSSSIVICSIFFQTNLIMSSHLFTEECSEEFXNRFSYISDADSSKSRTKSSSAASFIYEDDESFAETIILFVFYEIXKAXSLVLDKETDXLYELNKQQEDEIKELKTRLQTKENTSSDFIYFERSRSQKIPDSSLFTDEKNSIXENXYEKIQNKLEINVDLFSNERVKLSYVHSRLFDDAAEITQTRCEHDCVNFYRIVEDFLKELAQLFDDSNKKVNFRREYYNLVQESKKFSEFYTQFQRLFFYLDYHEKQLIVDLKDKINSHLXFIXIDQLVQSDSLKEIHFYLIHLNNDQRVIREIKNKVNFIKCVDDLSKIIFHKVTVITQSVDHSKSDHLKSRDVILTSVKKADVLVEICFICHKSDHSFRECLNRSTRINAVNKEYDRFNSNFDSKN
Ga0272436_100037385	F021026	N/A	MNKFFAQQHHLFLHQLIHSCRLQEFDDQVTLIDDITYVIEITMIFDEYIERLFFYVTELNQYLIIMSLSXLHHHVIDVNFEHNILILSFFFCLNHCCSFLVKIYDLNQQEENFLFEINKVTFFQSRSQFAHKKQFSSRITHKK
Ga0272436_100037387	F094625	N/A	MKLSHNFSINDECAVKQFTQNMIENLVEIFRAMQELQNQVXQHDVIILFSFIIFNFSVYIKLNSQFLAMIAQIIAQILNNQSSFIVHLFANSVAVIIAFRFKKLLDIFEYERNKDXLNVXEQSLIQRMNMNDDHYFFHQAKIIYVESRLIIDKKTHNLMNQYXINDFCIIFIFADX

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272436_1000373

Overview

Ecosystem & Geography

Associated Families

Sequences