NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272436_1000437

Scaffold Ga0272436_1000437


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000437 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)93798
Total Scaffold Genes103 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (36.89%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F013598Metagenome269Y
F017767Metagenome238Y
F017941Metagenome237Y
F032102Metagenome180Y
F036036Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100043763F017767N/AVTFIKDVMKKMLISSMMNMSDNSFASESLTIECVLSSNEISYSLKSLIDIEAADYLFINEVIT
Ga0272436_100043767F017941N/AMKIADLKKNNDQSIYKQILKINEINKNCMLLHEAIARDETQYKNIKLKNC
Ga0272436_100043768F013598N/AMNFIINLFDSYDYNAILTVICKLSKERHYIFCIIDDEDITVEKTAEMLLQ
Ga0272436_100043769F036036N/AMLVSLIHRLFSCFDQSFASKDQYFIHVIEYIFNLSDLQTFVNAFILNDVEIEAHMKVKVLIHEEENQEDD
Ga0272436_100043771F000597N/AMLNDSFTSESLTIECVLSSNEISYSLKSLIDIKAADCSFINEVIVQIVYDQLQIELLTLIKVKSIQEFDDYYVKKLITYVIYLNLTVQNHMINTVFMLIT
Ga0272436_100043775F013598N/AMNFIINLFDLYNYNIILTVICKLLKERHYISCIIDDEDITVEKTAEMLLQ
Ga0272436_100043776F017941N/AMKIIDLKKNNDQSIYKQVLDVNEINENYTLLREAMTRDEAQYENIKLKNC
Ga0272436_100043789F032102N/AMKIADLKKNISELIYKHILKINEINENCMLLREAIAKDETQYEDIKLKNFQTQNEVLYHDSQL
Ga0272436_100043790F013598N/AMNFIINLFNSYDYNVILIVICKLLKERHYISCITDDEDITAEKTAEMLIQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.