NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272436_1000496

Scaffold Ga0272436_1000496


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000496 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)86497
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (49.04%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F001253Metagenome736Y
F003820Metagenome466Y
F013598Metagenome269Y
F018839Metagenome232Y
F032102Metagenome180Y
F037508Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100049611F032102N/AMKIADLKKNISESIYKQILETNEIDENCMLLRKAITRDETQYEDIKLKNCRVQNEILYKDSQL
Ga0272436_100049615F000597N/AMKKMLISSMMSMSNDSFTSESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIMQIVYDQLQIESLTLIKAKSIREFDNHYAKKLITHVIYLNLTVQDHTIDTASMLITQLNQH
Ga0272436_100049616F003820N/AVNNKQRVNYQLRSQLCTVIVKVTVVFDKCIATLLSVMTLIIDYVKSIFSSIFESARLSTICYTCKTLNHLFKNYSQNKINTSASHAFISRLHEIIILKNKKNEKMSSFKDSEAKN
Ga0272436_10004962F037508N/AVIFRLEGDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIRKCRCKYVALKQLNKLFSSFYSEFTRIFSFLNYDDITLMNDIQNKINNRLQNALSVCLIEFSSLDKLKIFLQDVNNKQRVNYQLHDEQ
Ga0272436_100049621F018839N/AMMIAKVVTFNHLTSNLYAAVFIIAMFIELKDEAKLTELNDFTILLNEDDFSLS
Ga0272436_100049623F001253N/AVTFIKDVMKDVLISSTMSSLNDLFALKSLTTKCVLFSNKISYSLKSLIDIEAADNSFIDELIAQNVCNYLQIESLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDHMKRFIFMLIIQLDQHQMILEKT
Ga0272436_100049625F037508N/AVIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIRKCCCKYVALKQLNKLFSFFYSKFTKIFSFLNYNDITLMNNIQNKINNHLQNALSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLRDEQ
Ga0272436_10004963F001253GAGGVTFIKDAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRRFDDHYAKKLITHAIYSNLTVQDHMKRFVSMLITRLDQHQMILEKT
Ga0272436_10004969F013598N/AMNFIIDLSDSSEYNAILTIICKLSKKKHYISCITDDKDITVEKTAEMLIQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.