Scaffold Ga0272436

Basic Information
Taxon OID	3300030523 Open in IMG/M
Scaffold ID	Ga0272436_1000508 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	85298
Total Scaffold Genes	86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (23.26%)
Novel Protein Genes	21 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (33.33%)
Associated Families	17

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.9	Long. (^o)	159.8	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F005901	Metagenome	386	Y
F008668	Metagenome	329	Y
F011463	Metagenome	290	Y
F021216	Metagenome	219	Y
F028367	Metagenome	191	Y
F028368	Metagenome	191	Y
F036504	Metagenome	169	Y
F037509	Metagenome	167	Y
F044226	Metagenome	154	Y
F046102	Metagenome	151	Y
F055317	Metagenome	138	Y
F057011	Metagenome	136	Y
F057012	Metagenome	136	Y
F070712	Metagenome	122	Y
F080688	Metagenome	114	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100050814	F008668	GAG	MNFNSNTTDYEITCERFEARKANDIIIQMKELLIFNCQQLKKMKQIIEAQINKHK
Ga0272436_100050817	F028367	N/A	LKENYFKKSFLINASFIFQSNSFNLRSLINSDFIIYMLIQNKLVNKVYQKLEIQFILLAKEKLIXDYDEKLVRKTITHKILLNLTIKSHKKLTMSMLIVDIEHHEAILSKFXMNKNEILLNMKHDTIIFSDQLNISISIFSISQNTKHLS
Ga0272436_100050818	F070712	GAG	MNDIKEKKFLIKVRKQVIFAEKQDSLNFYKKIEVITLVDHSKSCDVILTNVKDINLQAEIYFIYHKSNHTSKECFDXSKVNALKNDEFNQFTSNFEFDFDSKN
Ga0272436_100050819	F011463	N/A	LKKTKLIIEAQINKHRXDVIYKIDDQIXLSFRNVKIMRSCKNLKDKQLDLYSIIVKVETFYHLRLSTSMKHIHSMFSLKLLQSYSENSLSEQHSESLKSITIKDNEHXKIDDILNFRRYXDXIQYKVKXKDLDRNDEXYYVDKEKFNDSEKVLNEFHKLYLSKSR
Ga0272436_100050820	F044226	GAG	MIEFSDNVNTFSIISMISFYFNKEFHSXMSFNSDTTDYEITYERIEARKADDIIIRMKELLNFDH
Ga0272436_100050823	F055317	N/A	MKQRDKNKIQQLKAKLQTLTAITVNVIITAFSVVIYFERSRYHKILDSSMFIDEKNSTXKNXSLDIREKLAINIDIFSNELYKLRYINSQLADDVIEITQVRRDFNCDNFYLTVNKLLKKLAQSFHDSDKKDNYRRKYINLIQESKKFSDFFNQFQQLYIYLKYQKNILVIDLKNKINFRLXIFXTTQMKLLIKLSDIXNYLIHLNNEHRAVQKIKNKLLKCNDSKIIISKATIAIQSFASKFDXSKFHSAVLTNVKNTDVLVEICFVCYKSDHSFRECLNQFIKVNAVDENYDHFELNTESEFKSKN
Ga0272436_100050826	F002432	N/A	MQNNXAKXLSMMKFSENFNIFLIISMISFYFNKEFHSXMSFNSDTTDYKITCKRLEVRKVDNIIIQMKELFIFDHQQLKKMKQIIEAQINKHKXDIIYKVNDXIXLFFRNIKTTRSCKNLKDKQLKFYQITVKVEIFYHFYLSISMKQLHSMFSSKLLHSCLDDFLSEQHSESFKSLTIEYDEHXKIDDILNFRCYQD
Ga0272436_100050828	F005901	N/A	MNDKLQTNVDHFDNENICIVYVISRLEDDAAEYIFVXCHHDTLHSYILIYELFEHLKEIYDELNRNRKCRRKYNALRQIDKSFNVFYFNFMKLFSYLDYDDCTLMNDLQNKINNRLQNALSICSENFTSLTRLRIFLQDVNNKQXVNYQLRSQLHTVIVKVTVVPDKCAATSLSAMMTLIIEYVKLTIFSISESVRSSIVCYICKISDHLFKNCSQNKIDISTSHAFILRLHEIIISKNKENEKMSFKNNEAKN
Ga0272436_100050831	F057011	GAG	LICIELXVRFXFKKLTIFFKIIKEIEIISLCSQIKVLLKENYFKKSFLINASFISQSNSFSLCSLIDNDFVVYMLIHDKLVNKVCQKLEIQSISLAKEKLIQDYNEKLARKTITHKILLNLTIKSHKKLTMSMLIVDIEHHEAILSKFXMNKNEILLNMKHDTIVFSD
Ga0272436_100050838	F055317	N/A	MKQRDKSEIQQLKAKLQTLTVITVNVIITAFLIVIYFEXFKYHKILNSSMFIDEKNSTXKNXSFDIXEKLAMNIDIFSNELYKLSYINFQLADDIIEVTQVRRDLNCDNLYLTVNELLKKLAQSFHDFDKKDNYCRKYINLIQELKKFSNFFNQFQRLYIYLKYQKNILVIDLKNKINSRLXIFXTTQMKLLIKLSDIXNYLIRLNNEHRAVQKIKNKLLKCNDSKIIISKATIAIQSFASKSDXSKFHSAVLTNVKNTDVLVEICFVCYKSDHSFRECLNQFIKVNAVDENYDHFELNTESEFKSKN
Ga0272436_100050839	F028367	N/A	VKIISLCNLDEILLKENYFDKLFLINALLILQNELFNLRSLIDSDSAVYMIIYINLVNRVCKELRIQSISLTKEKLIKEYDEKIFKKTIIHKILLNLIIESHKKLTVSMLIADIDHHEVILEKSXMNKNEILLNMQIDVIVFSNQLNTLILIFSISLNSKHSSXSRSTSFIFISQSKISKMLKQSVSTTI
Ga0272436_100050842	F080688	N/A	MYQITHSDIHQSSSSEDFHEKQTADSTSSQLSEHSIEVQFSDHL
Ga0272436_100050844	F002432	N/A	MQNDXAKXISMIEFSDNVNTFLIILMISFYFNKEFHSXMSFNSDTTDYKITREXIEARKANSIVIXMKELLNFDYQQLKKTKLIIEAQINKYKRDVIYEIDDQIXLSFRNVKIMRSCKNLKDKQLNFYSIIVKVETFYHLRLSTSMKHIHLMFSSKLLRLYSENSLSEQHLESLRSITIKNNEHXKINDILNFRRYQDXIQYKVKXKDLNKDNEXYYVDKEKFNDSEKVLNEFHKLYSSKSR
Ga0272436_100050848	F021216	N/A	MSQMKSRMKSNAMRRKHHRLEKAFRNHERSDDDHSNDTLNEHTESISSCDVIKELNEREK
Ga0272436_100050854	F096307	N/A	MLYIVVTQINVSLKEDMLKHKKDVDLKDVYDTKKCVCHRNLLTTHNTKKCVCLKNNRSXLKDARKEKRCXVRSKSDLDQISTKSLTSSNQFXHICNI
Ga0272436_100050860	F028368	GAG	LCKLDEILSKENYFEKSFLIDAYFIFQNQSFNLRSLINSDSVIYTIIHSNLVNKVCKKLRIQFILLVKEKLIKDYDEKIFKKIITHKIIFNLIIESYKKLTVSMLIADIDHHEVILSKFXMNKNEILLNMQNDVIVFLNQLNTSISVFSIFPNSKHLSXLRLSLFFSITQIKTFMMLKQFISITAQKESFSIQSINVASFKTLLNHLKKNKIKVFALFMMNINRKIAYNTQCNLNALINKMTQNLKDIKAKLSSKYHKFLNVFDQT
Ga0272436_100050864	F036504	GAG	VHEIEICTSSRVLLSELLKHLKEIYEDQNLIQKCRCKYVALKQLNKSFSSFYSKFTKIFSFLNYDDITLMNDIQNKINNHLQNALSVYLIKFSSLDKLKIFLQNVNNKQQVNYQLCDEQXTVKLIAVLKKRFVSLSTSTSVLTTNYVQLATFFILESEXSRMSIICFNCKVLSHLSKNCFQLKTSTSTSHAFISCLNEIIMLKEKKKLFTKKSKNETKN
Ga0272436_100050865	F046102	N/A	MKDVLISSTMSSSNDFFASKSLTIECVLSNNEISYLLKSLIDIEAADYSFIDELIAQNVCDCLQIKSLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDHMKRFVFMLITQLDQHQMILEKTXMNKIEVTIDMRDDHLQFSSFKAHIKASIKAHLTIFXARKSR
Ga0272436_100050870	F037509	N/A	MILISLLIQIHSTDNETSIKKFVYLMINDIERQNNIKKSIKSMKTYDHVIAKEFIAQSVASVQINQ
Ga0272436_100050875	F002432	GAG	MSFDSDTTDYETTHERLEARKADDIIIQMKELLIFDHQQLKKTKQIIKAQINKHRXNVIYKVDNXVXLFFRNIKTIRSCKDLKDKQLELYQITVKVEIIYHLHLLISMKKLHLMFSLKLLQLCSEDSLSEQHSKLLRLITIKNDEHXKINDILNFRHYQGXIQYKVKXTNLDRNDEXYYVNKEKFDDSEKVLNEFHKLYSNKLR
Ga0272436_100050877	F057012	N/A	MXLSXIDLDAXNYSEFEKXFVFIKVMIESNILIFYFISMFDDLFNFKSFTVNIILSNLEKIFKYLALINTEVINMTFINESLMSKLCECFDIQSISLSKSKSIXLYNEIFDXKSITYALYTLIMIQKHKNEIMFLLITCLNQHKIIIENLXLKRNQILTNFANDXLISSLRIQTLKSVISKASSQSAFHKFELNEICKMKXKNLNLIITSMIILKRLMNQKLVNKFIKSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272436_1000508

Overview

Ecosystem & Geography

Associated Families

Sequences