NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000514

Scaffold Ga0272436_1000514


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000514 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)85051
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (43.16%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F001253Metagenome736Y
F032102Metagenome180Y
F048685Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100051480F000597N/AMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLIIYAIYSNLTVQDHTIDTASMLITRLNQHQINLEKT
Ga0272436_100051484F032102N/AMKIADLEKNNDQSIYKQILETNEIDENCTLLREAIARDEAQCEDIKLKNCRVQNEILYKDSQL
Ga0272436_100051491F048685N/AMYRSGKQNIKIDALTRRADFVLRDFDDERVCYQRITILTSNRMKIADLEKNVSESIYKQVLDVNEIDENCTLLREAIERGEAQCEDIKLKNCRIQNEILYKDSQL
Ga0272436_100051494F001253GAGGVTFIKDAMKDVLISSTMSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDHMKRFASMLITRLDQHQMILEKT
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