NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000562

Scaffold Ga0272436_1000562


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000562 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)81245
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (58.02%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F061402Metagenome131Y
F069514Metagenome123Y
F094626Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_10005623F000597N/AMMKDVLISLIMSSSNDLFASKSLTIECVLSNNEISYSLKSLIDIEAADYSFIDELIVQNVCDHLQIESLSLIKLKSIRKFNDHYAKKLIIHAIYLNLTV
Ga0272436_10005627F069514N/AMIEFVDNNALFSVIFSTFFFLNKDFHSCMSFELDTIKYESFHECLQATKVENISEHMNKILTFAHESLVKT
Ga0272436_10005628F094626N/AMMKQVNKHRKEVDYEIKSKMFLNERNIVTARFFKKLNDKMLDSFINLNLVDSSYKLKLSEFMHVHDIFYSDLLRFVVDDLLSDQKNESLESIVINDEDE
Ga0272436_10005629F061402N/AMIEFINNNAISSLIEQSTFFLNKSFHSHMSFNLNSIEYEITQARIEADKAKNIFKHMK
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