 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030523 Open in IMG/M |
| Scaffold ID | Ga0272436_1000587 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 79540 |
| Total Scaffold Genes | 85 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (18.82%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.9 | Long. (o) | 159.8 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008668 | Metagenome | 329 | Y |
| F009377 | Metagenome | 318 | Y |
| F028367 | Metagenome | 191 | Y |
| F036994 | Metagenome | 168 | Y |
| F104136 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272436_100058758 | F009377 | N/A | MTRSTELESESVSTTRYETRNAERESLLSQNRTASEEEDMNASSNIEEENTNVLLFDHEMIKISISTKLNAXISAHEADDLVAFIKYICQQHDIEIKIQNDMIQMLNDINKINVELKAINIKLKVTQATLNAVQTRLQKKMKKKNVIIHHLEATSSRLSTLISKDRFSKSIKLSDSSLFKDSKQNVNNXLFXMQNKLKTNKNHFSIEEMKIAYVKSRVSETIIKHIVLRF |
| Ga0272436_100058760 | F104136 | N/A | MIFSIRLTQIFSESXSMNELXIXTNSSTSACKSTFNXRNXMLDQLSRHQQFKSLALSLASXXXSLLXSQLQSLHERNSEYQTLILLERSCLKKNSASNARSQNIEHTTVLNQLRCTKLQXIQKTTCFHQSSDXEQYTHILLHQHVXQLVXFQVVHCXCHLE |
| Ga0272436_100058770 | F028367 | N/A | MNMIALISIRISIQKTSHLFKVIKEIKIISLCKLDEILSKENYFEKSFLINAHLISQNQSFSLRYLINSDSIIYMIINSNLINKVCKKLKIQFISLTKEKLIRDYDEKIFKKTITHKILLNLIIKSHKKLTVSMLIADINHHEVILSKLXMNKNEILLNMQNNVIVFLN |
| Ga0272436_100058776 | F008668 | N/A | MSFNSDTTDYEMTCKRLEARKTEDIIIQIKELLSFNHQQLKKTKLIIEVQINKHK |
| Ga0272436_100058781 | F036994 | N/A | MKNVIEADSLVDLLIEEINFRLVIVADSLFACECRIKFTDR |
| Ga0272436_100058783 | F008668 | N/A | MINYKTTYEQLEVKKANNIIIXIKKLLNFNHQQFKKTKLIIKVQINKHKXDITYEVNDXV |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |