NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000618

Scaffold Ga0272436_1000618


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000618 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)76870
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (20.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008668Metagenome329Y
F028978Metagenome189Y
F039410Metagenome163Y
F076668Metagenome117Y
F086375Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100061810F028978N/AMKIIDLEEKENNKSIYXLILEVNKINKNYTLLREVILKDKTQYEDIKLRNCRVQNKILYQNDLL
Ga0272436_100061823F076668N/AMHSTDHYAIKETSVFKFTITTKKIMHMNNALFINILMLCNRKDATNQTLLHCAKFENIRRLQKISFLKXSSKDXLEKLCMIMLKRTCYNMIFAFSILSXVLFKKSLKTLXFSLXKVSALLFCIITLVVKFSLTFCFMQISTXQQFMLNASSFKIKIXDLXRISXXILMSCFSR
Ga0272436_100061825F086375N/AMLILFVNSKFIASXNHDENXFNEIKKHYKQQNNDHVIIFKXLHKLRQFNVXKEVNEINKTAMKDNVKDEIEQERKNKDIHDNASQ
Ga0272436_100061853F039410N/AMFIMNKAKTSILSFFEXFNRILNEVTFMLXIENDSFXIIVETDHLSILEIFDXEVKVNEVDRDQLECFELKKIEKIEIRVFNXFEKMMTSICIFSNISFLFIHDFSNMTSXLSMSAINIKTVNFLXLSMMRFDRILXVIVFLNIFSSYSFINFSFVSDIDXIFSSLHTLSTRLICMII
Ga0272436_10006186F008668N/AMKFSDNFNIFLITSMILFYFNKEFHLXMSFNSDTTDHETTCKQLEARKADDIVIQMKELLSFNHQQLKKMKLIIKVQINKHKXNVTYEVNDXV
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