 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030523 Open in IMG/M |
| Scaffold ID | Ga0272436_1000692 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 70750 |
| Total Scaffold Genes | 69 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (13.04%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.9 | Long. (o) | 159.8 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009377 | Metagenome | 318 | Y |
| F017767 | Metagenome | 238 | Y |
| F028978 | Metagenome | 189 | Y |
| F046102 | Metagenome | 151 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272436_10006922 | F046102 | N/A | LSQXDHHVKRREEIIYREIKEXGKKLVTFIKDAMKDVLISSTMSSSNDLFASKSLTTECVLFSNEISYSLKSLIDTEAADYSFIDELITQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDHMKRFVFMLITQLDQHQMILEKTXMNKIEVTIDMRDDHLQFSSFEAYIKASIKAHLTILLSKKIAIEQKSLIST |
| Ga0272436_100069242 | F009377 | N/A | MTRSTELESESVSMTRYETQDAEKESLLSQNXTASEEEDMNASLNIEEKNTNALFFDHEMIKISISTELNAXISAYEADDLIVFIKYIYQQHDIKIKTHNDMIQMLNDINKINIKLKAMQTMLNAVXTRLQKEMKKKNVIIHHLEATSSRLSTLILKDRFSKSIKLSDSLLFEDSRQNVNNXLFXMQNKLKMNKNHFSIEEMKIAYVKSRVSETTIKHIALRMRNMITNSFLEVEEILSIINKMYDDFNQHHMTQQQFLKLY |
| Ga0272436_100069244 | F017767 | N/A | MKDVLISSMMSMSDNSFASESLIIEYVLSSNEISYSLKSLIDIEAADYLFIDEVIAQIVYKLIIESSFKLTF |
| Ga0272436_100069253 | F028978 | N/A | MKIADLEEKENDELIYRLILEANRINENCILLRKVVLKDEAQYEDIKLRNCRVQNEILYRSDLL |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |