NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000704

Scaffold Ga0272436_1000704


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000704 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70017
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (42.86%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003820Metagenome466Y
F013598Metagenome269Y
F017941Metagenome237Y
F018839Metagenome232Y
F036036Metagenome170Y
F055318Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100070448F036036N/AMLVNLIHQLFSCFDQSFTSEDQCLVHLFRYILDSINLQTFASAFILNDVRVEAHTRVKVLVHEEEDQEND
Ga0272436_100070449F013598N/AMNFIIDLSDSSEYNAILMIICRLSKKRHYISCITDDKEITVEKTAEMLIQ
Ga0272436_100070450F017941N/AMKIADLEKNNDQSIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNC
Ga0272436_100070454F003820N/AMKLFSYLDYDDCTLMNNLQNKINNRLQNALSICSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTIVSDKCAATSLSAVMTSIIEYVKSTIFSISESVRSSIVCYICKISDHLFKNCFQNKIDISSSHAFIFHLHEIIISKNKENEKMSSFEDSESKN
Ga0272436_100070455F018839N/AMMITKVVTFNHLTSDLYAAVSIIAMFIESKDEAKLIELNDFMILLNEDNFSLS
Ga0272436_100070465F003820N/AMKLFSYLDYDDHTLMNDLQNKINNRLQNALSVCSENFTLLTRLRIFLQDVNNKQRVSYQLRSQLRTVIVKVMIVSDKRAATSLSVMTLIINYVKSTFSSTSESARSSIICYTCKISSHLFKNCSQNKINTSASHVFISHLHEIIISKNKENEKMFSENNEAKN
Ga0272436_100070469F017941N/AMKIADLEKNISESIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNC
Ga0272436_100070470F013598N/AMNFIINLSDSSEYNAILTIICRLSKKRHYISCITDDEDITVEKTAEMLIQ
Ga0272436_100070474F017941N/AMKIADLKKNIEKSIYKQILETNEIDENCTLLREVVLKDETQYKDTKLRDC
Ga0272436_100070477F055318N/ALNDIEALCDDEALCVDRVQSFRDRADFDNLNAHATSNLHADEKVK
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