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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030523 Open in IMG/M |
| Scaffold ID | Ga0272436_1000867 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 59475 |
| Total Scaffold Genes | 69 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (23.19%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.9 | Long. (o) | 159.8 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007840 | Metagenome | 343 | Y |
| F018839 | Metagenome | 232 | Y |
| F026450 | Metagenome | 197 | Y |
| F029296 | Metagenome | 188 | Y |
| F036036 | Metagenome | 170 | Y |
| F046102 | Metagenome | 151 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272436_100086734 | F036036 | N/A | MLVNLIHHLLLCFDQSFASEDQCFIHVIEYIFDLSNLQTFTSAFILDDVRVEVYTRMKVLVHEEESQENDXKQDIIVDKLDHE |
| Ga0272436_100086745 | F007840 | N/A | MIDAIEKQNNTREFIESTARLIELLNDLQLIKYASFTSINRISDKESSLIARESNXSRESINLQIKQQK |
| Ga0272436_100086746 | F026450 | N/A | MSRFFKEHFEALFFIIEDNDSFIEIITSSMTMKALKKRCEELKARLQAREIISSSSIYSECSRFQKILNSSLFTDEKNSIXKNXYEKVQNKLKINVDLFSSERVKLSYVHFRLFNDAAEITQSRREHDCFNLYKIVNELLKELTQLFNDSNKEVNFHKNYYNLIQEQKKFSKFYTQFQRLFFYLDYQEKQLIVDLKNKINLQLXFAXVTQLIQLNTLKEIRFYLIQLNNDQRAI |
| Ga0272436_100086752 | F029296 | N/A | MSELLIFDHQQLRKIKQITEAQINKHKXDIIYEVNDQVXLVFENIKITRSCKDLKEKQLDLYSITVKVEIFYHLQLSRSMKHIHSMFSLKYLQSSSNNSLLKQHSEFSRSMIIEENEKHXEVDDILNFRXYKERLQYKIKXIKIDYDDEXYYVDKEKFNDSKKVLNEFHKLYLNKLH |
| Ga0272436_100086762 | F046102 | GAG | VTFIKDVMKDVLISSTMSSSNDFFILKSLTTECVLSSNKISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFNDHYVKKLITHAIYSNLTVQDHMKHFVFMLIIRLNQHQMILEKTXMNKIEITIDMRNDCLQFSDSKTHINASLISLSVIKKIMIEQKSSTST |
| Ga0272436_100086763 | F018839 | N/A | MMIMKVVTFNRLTSDLYAAVSIIAMFIESKDEAKLIELNDFTILLNEDDFSLSQVMTEEINLFSI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |