NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000912

Scaffold Ga0272436_1000912


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000912 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57386
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (24.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F002432Metagenome559Y
F039410Metagenome163Y
F059496Metagenome133Y
F068292Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100091217F039410N/AMFRAFKLHXVLYAIFLLIFFMNKANTSVXFFFEQFNNVLNKVMFMLQIENDSFXIVVETDYLSILEIFDXEMKVNKVDRNQLECFELREIEKIEMKVFNXFEKTMMSICIFSNISFLFIHDFSNMTSXXSMSAINVETVNFLXLSMMRFNRILXVIVFLNIFSSYSFINFSFVSDIDXIFSFLHTLSTRLICMII
Ga0272436_100091222F059496GAGLIFKDNYNXILRIQKKIDTKASIYVMFKDCARLERNVFVTXKENDVNEQNVDERKEC
Ga0272436_100091238F068292N/AMSHQDTQSAEQQVNQKEASMISVLIHHSEVEXSSTFKAHSQRESSTLSDNENDHHKFIKLSNSLIFIETDDSIXETXNIKIADKLNVNVNHYFTEKIHIVYVIFRLQDDANQQIYAKHNVDAFLFYQSLSELLKHLKEIYEDQNLIRKCRCKYVILKQLNKSFSSFYSEFTTIFSFLNYDDITLMNNIQNKINNYLQNALSVCLIKFSSLNKLKIFLQDVNNKQQVNYQLRDEQXTVKLIAASKKRFVSSLTSVSTTSYV
Ga0272436_100091239F000597N/AMSSSNDLFASKSLTTECVLFSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDNHYAKKLITHAIYSNLTVQDHMIDTASMLIT
Ga0272436_10009127F002432GAGMMKFNDNFNIFSITSMILFYFNKEFHSXMSFNSNTTDYKTTYEXLEVRKANDIVIXMKELLNFDHQQLKKMRLTIEVQINKHKXNITYEVNDXIXLSFKNVKTMKLCKDLKDKQLNFYQITAKVNIFYHFHLSISMKHLHSMFSLKLLRLYSEDFLSEQHSESLRSIIIKDDEHXEINDILNFRRYXDXIQYKVKXKDLDRNDEXYYVDKEKFNDSEKVLNEFHKLYSSKSR
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