NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272436_1000973

Scaffold Ga0272436_1000973


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000973 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54148
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (48.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F044226Metagenome154Y
F048017Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100097342F006206N/ALKENYFEKSFLIDAHLISQKRSFSLCFLIDSDSVIYMIIHFNLVDKVCKKLRIQSISLIKEKLIKDYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADINHHEVILSKL
Ga0272436_100097346F044226GAGMMKFSDNFNIFLITSMILFYFNKEFHLQINFDSDMIDYETTHERLEARKANDIVI
Ga0272436_100097347F048017N/AMKNKQLNQCQVNYLNILLKFNFQIIFRSDKINTKVNVLTQMFLTNVSESAKQFEDCFQTILTFDKVDILFIDLKSNANSKSEVNLYQKVQLINQINEFCSKYRQAMNDNKLKFHIIKLKNCKIINDILFRKNLL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.