NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1001079

Scaffold Ga0272436_1001079


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1001079 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49644
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (40.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y
F017941Metagenome237Y
F036036Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100107934F005901N/ALIDELFEHLKEIYDELNRNRKCRCKYNALRQAEKSFNVFYFDFMKLFSYLKYDDCTLMNDLQNKINNRLQNALSVCSENFTSLTRLKIFLQDVNNKQRVNYQLHSQLCIVIVKITVVSDKCAATSLSVMTLIINYVKSILSSISESARSSIICYTCKTSSHLFKNCFQNKINTSTSCAFISCLHEIVISKNKENDFFKEE
Ga0272436_100107935F000597N/AMKDVLISSMMSMSNDSFASESLIIECVLSSNKISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIQEFDNHYAKKLITHVIYLNLTVQDHTIDTASMLIIQLDQHQMILEKI
Ga0272436_100107940F017941N/AMKIADLEKNISESIYKQILEINEIDENCMLLREAITRDETQYEDIKLKNC
Ga0272436_100107942F036036N/AMLISLIYHLFSCFDQSFTSEDQCLVHLFRYILDSIDLQMFANAFILNDVRVKAHTRVKSLVHEKENQEDD
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