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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030523 Open in IMG/M |
| Scaffold ID | Ga0272436_1001141 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 47247 |
| Total Scaffold Genes | 55 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 47 (85.45%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.9 | Long. (o) | 159.8 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003362 | Metagenome | 491 | Y |
| F023762 | Metagenome | 208 | Y |
| F041515 | Metagenome | 159 | Y |
| F104133 | Metagenome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272436_100114135 | F003362 | N/A | MAVKAKRIKCARCGERETVMRGERGPASIYCDLCRDEVKREQTALRAQAYRQRQRFST |
| Ga0272436_100114148 | F041515 | AGGAG | MSQMIVLEQGRDEREQATPERRPVAAAPVTLFEVIDRAVSAVIDEFDRWGDLDTREGEDEAHFEAYVRWRVAIIDDAVAQARTLMSADGLTAEGSPWLAAHARA |
| Ga0272436_100114150 | F023762 | GGAG | MVAQAQDTHTPPIPAPGGTPHALTPQERGRLGGQATFARYGRAHYSKIGTVGFAHALDAGWGEYLLQKLAPTYRAKFGRDPVLGRNKAGDQARAAARTATPTLGRCAWLGCTAPATARHHVDGWKVSVETCGLCDMHHTELERTYRDALRRHRPFARTQEPPTKRAIAISAGVGLDDAIP |
| Ga0272436_10011417 | F104133 | N/A | VRTPLPLPSGPGHFTVEPDGTLIFADGTCLAVVRIDAFLNLSALGPYDQERVCREFAALVHGLAHAQGMQAVIESNPTAPDAAIAAVATLVTTEDPELSDIAGDTLGWLRGEVARTHVPDLSGYAVVAPAPERKGGLAGLVEEFRDQMGVRRTGPETVDRRGLDAAVDDTLTQLKASDLPARRLRRVDTLAFLWRSANPGTPQPEDLAAACDAGELAMALTPAYWRERRRQVEHGVSADGTPVMYSRTLYLLHAKELTNPGTFTDLIAIECNARLSWHLRGLDNLRERGRVLRKRKAFATSVRRAYEKKKLPSLDDEDNKAEAEGLAQELHSAEEGLALSTVVLTLHAKTVEELDTATRRALSLIGTRLGIQPGKGRGYQKPLWQASLPLGQNTARRRAKRWHTAVVGNGLPYLAHNPGTPTGFPVGFTTRGHELVLLDPIHDTLSTSVMVVTGAQGQGKTFWLLRCALWARYRGQRVTLIARADHFAPFVALCGGTYIAPGKDDDPPIINLWDLPAGMRLHRKIDFLVAAHEIMLCNPGQDLDDEVRGLLDRAIQAVYRDHGVTAGEERPLLREDAPLERALVAHIESLTKEEGLTARKQELLEKLHATLLQYVTDPVYGEGRYAHLVDRPTRVGIEDDVLCWNLDELAPRLYALTLFTITATMAHRAKSTFDAARGTSGAGTSAEFLAIDEGWFLSEFMKAGAELTNWAKRSRHIGLILAFASQQVSELIKPATKPIFDAASLRCIFRLADVRETEDTAAWAARTLQCSVEEAHTLTGLHEGQMMLFRQAKDGSRRRGLVGVMAPPLEYWAFTTETWTDVPKRNAAVARLGSVAAAIRHLASKEA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |