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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030523 Open in IMG/M |
| Scaffold ID | Ga0272436_1001673 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35469 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (85.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.9 | Long. (o) | 159.8 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016760 | Metagenome | 244 | Y |
| F018488 | Metagenome | 234 | Y |
| F029944 | Metagenome | 186 | Y |
| F036995 | Metagenome | 168 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272436_100167310 | F036995 | N/A | MTNAARDDRDLTPYDGTPTPTLDGPAGPGFETIPYDPTTDGEMVVTFYTRAQISPEDVQWTPITDPAEIAVIEGALAQGADPPYEVWVDQAPATLDPGRLTPAEEGTPMYAWEQTGPAVGEGQLYEVTDPVVRAAYEEAHLAQGTIEIINPADFYDAAWATDAARTTDPALYDAQIDALVARGDTWLEVEHAGGGVALGRYDAGPLERDTNGWEPVRVGDGPDGPTGNVYPDEATARQAAIAYNGADLAGIELNLDPAPVAAFDRDLTLALDL |
| Ga0272436_100167311 | F029944 | GGAGG | MNTATARRGGPTAGALAYTIDGQGRVLSVRAAMPLDPATARTDAPPPVALRTLVAPLTWEPVQRLLAWGAREGMTAAELLDSCRAATHQTTMTTRRRRSAR |
| Ga0272436_100167317 | F016760 | GGGGG | MRVPSGIKRAARATGRGLFVLAVPKTVRRSTDELRSVEMSPALGLVLRLTALLVLAGTVLAVHAVGHPLLGLARDALLLVGAVVILALSGALAPQGRLVGRLLLSYAKRESARRGLTWRGRLFRALARRLEPVTSEKEKGTINGR |
| Ga0272436_100167329 | F018488 | GGA | VEPTRRPPLGRPSWNERAALALLVVVARHLLTTEPAPLTADRLAHVVAAHDLPALVTLLGESPDPQARHAAQQLHRALRASQAGVYVCVLPGLPVALADPFFRLALAKAAAKAGLDLFPSDPTGHG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |