NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1001788

Scaffold Ga0272436_1001788


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1001788 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33415
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F048685Metagenome147Y
F094626Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100178824F048685N/AMYRSDKQNIKVDALTRRADFVLRGFDDERVRYQRITILTPNRMKIADLEKDVSESIYKQVLDANEIDENCTLLREAIERGEAQCEDIKLKDCRVQDEILYKGSQL
Ga0272436_100178827F001253GAGGVTFIKDAMKDVLISSTTSSSNDFFASESLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLPLIKLKPIRKFDDHYAKKLIIHAIYSNLTVQDHMKRFASMLIT
Ga0272436_100178829F094626N/AMFLNERNIVTARSFKKLNDKMLDSFINLDLIDSSYKLKLSESMHVHDVFHSDLLRFVVNDSLSDQKNESSRSIVIKDEDE
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