NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1002039

Scaffold Ga0272436_1002039


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1002039 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30316
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (88.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035137Metagenome172Y
F075492Metagenome118Y
F078022Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100203914F035137N/AMRGKWERKSDTLWTYRLAGAPRPYGYVVQYKDTGRSDADWDATVTATRLDDDKTITERVTFDEAKMAMEQYAQQHGDDVWRA
Ga0272436_100203935F078022GGAGGMTIDSDYINLTQASKLAGLKDYSSLYRAARTGRLKTVTMAAGPRTVRRTTRAWLREYLDSQRRET
Ga0272436_100203936F075492AGGMSDYPDYPDYPNPTRAAGGSRADETTTEEILAVIATEEPRGATADQITIAIGLGFDGTLIRDTLEELVDGGLLNQFGIGHGAVYTLNARA
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