NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1002350

Scaffold Ga0272436_1002350


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1002350 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27109
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032102Metagenome180Y
F070712Metagenome122Y
F096307Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100235010F096307AGAAGMLYIVVTQIDVSLKEDVLKHKKDVDSKDVYDTKKCVCHRNLLITRNIKKCVCLEDNRSXLEDARKEKRCXVISESSLSQI
Ga0272436_100235011F032102N/AMKIVDLKKNINESIYKQILEINEIDENCMLLREAIARDETQYKDIKLKNCXIQNEILYHDSVMNVSKLIRAS
Ga0272436_10023508F070712GAGMNDIKEKKFLIKVRKQVIFAEKRDSLNLYRKIEVTTFVDHSKSYDVILTSVKDIDLQAEICFICHKSDHTSRKYSDXSRVNALKDDEFDQFTLNSEFDSDSKN
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