NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1002579

Scaffold Ga0272436_1002579


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1002579 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25205
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (95.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018488Metagenome234Y
F034417Metagenome174Y
F058564Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100257911F058564AGGAGMVPIGYTMSGHPLCLPCLDGDYRLAPDGAAYARDGQSVTAAVVPIHSGDPDDGAPCAGCGLSLAAPPDASIVWTCPYCGSNDLRILYDERRACRIGTLNDTGDPADAEPWPSYASDEFVDIDPGSFAVHCDACNTHNIMPRKGGQTNDLGHQQAA
Ga0272436_100257912F034417AGGGGGMTWAISKPRDAWMRQAKDAWAALEPQAPKGSRLRDLAAIDHHNVARLIEALAALTPGQVSQELQNLAGLRPVGEVLGMPDMGDADGGDAWDW
Ga0272436_100257935F018488GGAMGPTRRPPIGLPGWNDRAAVALLVLVAGHLRAAEAGTLTPDRLVRFVAAHDLPALVAVCEGSPSEQARYGAHQLRRLIRAGQAQVYQRVLPSLPVALADPFFRLDLAKAAARAGLDLFPLVS
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