NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272436_1002606

Scaffold Ga0272436_1002606


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1002606 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24992
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (24.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036504Metagenome169Y
F065268Metagenome127Y
F079402Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100260618F079402N/AMQNKLKMNKNHFSIKEMKIAYVKSXVSETMIKHIVLRMKNMITNLFLEAEEILLIINKMYDNFNXHHMT
Ga0272436_100260620F065268N/AMTRSTELKSESVSTIHYKLXNAERKSLLSQNXIASEEEDMNASLNIKEENTNALFFNHEMIKISISIELNAXISTHEADDLITFIKYIC
Ga0272436_100260624F036504GAGMNIKIANKLDVNVNHYFTEKICIVYVIFRLEDDADQQIYAKHHVDTLSFYQSLSELLKHLKEIYEDQNLIXKCHCKYVALKQLNKSFSSFYSEFTKIFSFLNYNDITLMNDIQNKINNHFQNALSVCFIEFSLLDKLKIFLQDVNNKQXVNYQLHDEQXTVKSIAASKKRFVSLLTSTSVLTTSYVQLATFFTLKSEQSRMSIICFNCKVSSHLSKNCSQLKISTSTFHAFTSCLNEIIMSKKEKKLFTEKSKNETKN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.