NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1002686

Scaffold Ga0272436_1002686


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1002686 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24440
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (92.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023762Metagenome208Y
F041515Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100268614F023762GGAGMVAQTQDTHTPVIPIPDGTPPPRALTPQERGRLGGQATFARYGTEHYSRIGRVGFQRAIEAGWGEYLLAKLAPSYRAKFGRDPVLGRNKAGDTARAQARKATPTLGRCAWLGCTAPATERHHVDGWQVSAETCGLCDAHHAELERSYRDALRRHRPFARAQEPPTKRAIALSAGVGLDDAIPF
Ga0272436_100268616F041515AGGAGMGMNQMIVLQAGRDAQEAQDAQREPQPSPMNAAPTTLFEVIDRAVSAVLGHFDRWCDLDEREGEDEAHFEAYVRWRVAIIDDAAAQARALMVADGLDAEGSPWLAAHARA
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