NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1003341

Scaffold Ga0272436_1003341


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1003341 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20485
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (19.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F009580Metagenome315Y
F037509Metagenome167Y
F055318Metagenome138Y
F074204Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100334113F055318GAGLNDIEALRDDEALCIDRMQSFRDRADFDNLNTHATSNLHTDEKVK
Ga0272436_100334115F037509N/AMILISIFIQINSTDNETSIKKFMYLMIENIKRQNNIKKSIKLTRKYNHVIAKEFIAQSIASVQINX
Ga0272436_10033413F074204N/AMIVFCILRQAQFRVFALALIDSEVSAYVFMNKFFAQQHHLFLHQLTHFRKLQEFDDQVALINDITHVVEITMILDEHIERLFFYVIELSQYLIIMSLS
Ga0272436_10033414F009580AGCAGMIEVRVKRLRLVDKMICIQISERNLAQKLDFFCKQXNFFIYIDDVTVVNIHDTQSEELFIXIFFNDFAQMLQLAVVAQLSLVADFLNLRNDQNLILNDDNDKV
Ga0272436_10033416F008735N/AMREIMIVVHVHALYQTLLSCIQSIFVLLILRYVKKLLESRSNDDSNRVYREMNDERRLIVQDLYDDLSYHCKKLKIQFYINXRTENNEREXNDNIMLSNLILKLLHCVKDLNXIFDHTLSKLFNSTLIIDQEIVRXLHLSKRITRXDFNIXKRCKKCKSFIMSKTRLN
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