NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1003633

Scaffold Ga0272436_1003633


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1003633 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19248
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (21.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F076668Metagenome117Y
F086375Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100363320F076668N/AMTCLLLTSSFLACASARKTSKSLMHSTDHYVIKETSIFKFTIITKKIMHMSNALFTDILMLCNRKDATNQALLRCMKFENIKRLQKISFSKXFSKDXLKRLCMIMLKRTCYNMIFTFSALSXVLFKKSLKTLXFSLXKVSALFFHIITLVVEFSLTFCSMQTSTXXQFMSNASSFKIEIXDLXRILX
Ga0272436_100363323F086375N/AMFTLFVNSKSITSXNRDENXFNEIKEHYKRQNNDCVIIFKQLHKLKQFNVXKEVNEINKAAMKDNVKDEIEQKRKNKDIHDNASQ
Ga0272436_10036336F001253GAGVTFIKDAMKDVLISSTMSSSDDFFASKSLTIECVLSSNEISYSLKLLIDTEAADYSFIDELIAQNVCDYLQIKLLTLIKAKSIRKFDNHYAKKLITHVIYLNLTV
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