NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1003690

Scaffold Ga0272436_1003690


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1003690 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19029
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (23.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007840Metagenome343Y
F010214Metagenome306Y
F061400Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100369012F061400GAGMTSESVEQIMLLKYYNCIMNLNSEKTIIEAXNIYRREEDEDNMINESDDSFKTDLQNVLRSINV
Ga0272436_100369020F007840N/AMIDTIERQNNTRRFIESTAKLIELLDDLQLIKYTSFILINRISNKESSLIARESINFQIK
Ga0272436_10036904F010214N/AVSVLFIYDASSLLCFSLMIFYTTMSXFNSXFKDERCFLCIHDAHDCSIRRAAFSYSMIVIHCTKKYVMKERCTXXEDKVXLYXVILFFFXFDLCHVNVEXIVSINVQLQSFNVXLXSMKENAFXSFSXALNFSHR
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