NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1003940

Scaffold Ga0272436_1003940


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1003940 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18070
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (80.77%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035137Metagenome172Y
F075492Metagenome118Y
F078022Metagenome116Y
F094623Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100394010F094623GAGGMSAAPVIHWIERSPYLHEARVTTAAGADLYAGYVAVSPGYDDWRGYVGRGFIPVGLGPRTEMHATVERRVAEIMQRGGEDLHHAS
Ga0272436_100394011F035137GGAGMSGEWERKSDTVWTYRLAGAARPYGSVVQYRDTSRSYGDWDAMVTAGRLADDTTIAEGVSFDEAKAALERHAQRQADRVDRANDRGARL
Ga0272436_100394015F075492AGGMAEHPDPTRSTGGSRADDTTTDEILAVIAVEEPRGATADQVALAIGLGFDGTVVQDTLEELVEQGVLDRIGIGHGAVYTLSAMA
Ga0272436_100394016F078022GGAGGVIVDSDYLTLAQASRLAGLQTSGALYRAAQTGRLTTVTTMVGPRSVRLTTQAWLHAYLDGQRRAT
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