NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1005008

Scaffold Ga0272436_1005008


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1005008 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15094
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016760Metagenome244Y
F029944Metagenome186Y
F074200Metagenome119Y
F102177Metagenome101Y
F102178Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_10050081F102177AGGAGMTNAARDDRDIAPYDWTRVSGPEGPALAVETTPLDPGNDQEVMYYTREPDGFGPDDFRWQAITDTAEIATIEGTLARGIDPPYEVWVDRVPVALDPDRLPPADDAPTVYAWEQTGPVVGDGQLYEITDPVVIAAYEEAHPAQGAIEIITPADFYDAAWA
Ga0272436_100500811F074200AGGGGGMARHSQTALYINDPVKIVAGVFTVRQAIYVAGIVLLTYGLISVTSRLPYSQSGLGQLHLLLIVGVPALLALLVVTFAGSGTVEPYARQFTGYLWRTTLVLPRRLAYRAAQLVHRPRAARVNGPVLVVEATSAAPVPEAPPMAAAIRPVRAPYVAPVVMTTPVAQTQRARLLAWLTAHPCVTDEEIAECVGLNPSAARPRRRELVEAGVVRKVDMDGRTRAGRRAARWAVVGTPGEAVAHG
Ga0272436_100500812F102178GGAGMAHANRPAPPVAATTPHRVPALVGIVSGVTYPYLLGGGVSYLALTVVSRDIGLMFAGALLVLYGFALSKALQGQRPSGAHASERGTDGAP
Ga0272436_10050082F029944GGAGGMMDHRIGGSLAYTVDGQGFVLSVREATATQRDTATTRTDATPPVALRTLVAPLTWEPVQRLLTWGAREGMTAAELLDTCRAATRPPATRAPHTRVKGAEAR
Ga0272436_10050087F016760GGGGGMNVTSGIKRAARATGRGVYILAVPKTVRRSTEELRHVEMSPALGLVLRLSAILVLAGTVLAVHAVGHPLLGLARDALLLVGAVVMLALSGALAPQGQLLGRLLLSYAKRESARRGLTWQGRLFRAFARRLEPATLEKKEKGKTDDRQR
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