NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1005363

Scaffold Ga0272436_1005363


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1005363 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14385
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003820Metagenome466Y
F004755Metagenome424Y
F039410Metagenome163Y
F052973Metagenome141Y
F059496Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100536310F052973GAGMFRDCARLERDVFVTRKENDVNEQDVDERKECXKSKRMLKK
Ga0272436_100536313F004755GAGLNYVHSRLFNDAAEITQTKHERDCVNLYRIIEDFLKELAQLFNDLNKKVNFHKEYYNLIQESKKFSEFYTQFQRLSFYLDYHEKQLIVDLKDKIHSRLXFIXIDQLVQSDSLKEIHFYLIHLNNDQRVIQEIKNKLKCVDNISKTIFYKATVVTQSVDHSKSDQSKSRNAILTSVKKVDVLVEICFICHKSDHSSKECLNRPTKINAVNKEYDXFDLNFDFNSKN
Ga0272436_100536314F039410N/AMFIMNKTKTLILFFFKXFNSVLNEVMFMLXIENDSFXTMIETSRLSIVEILVXVIEESKVDRDQLECLKLSEIEKIEIEVFNXFEKTMTLFCIFSNISFLFIQSLLNMTSXXLISAINIDTVNFLXLSMMRLSKILXVIVFLNIFSS
Ga0272436_10053633F059496N/ALIFRNNYNXILRIQKKIDTKASIYVMFRDCARLERNVFMTXKEDDVDEQDVDERKECXERKKCXVIFESDLD
Ga0272436_10053635F003820N/AMKLFNYLDYDDCTLMNDLQNKINNRLQNTLSVCSENFTSLTRLRIFLQDVNNKQQVNYQLRSQLRTVIIKVSVVSDKRAATSLSVTTSIIKYIKLTIFSTFESVRSSIVCYICKISDHLFKNCSQNKTNTSAFCVFILHLHEIVISKNKKNEKMSSFKDSEAKN
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