NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1005381

Scaffold Ga0272436_1005381


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1005381 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14362
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035137Metagenome172Y
F075492Metagenome118Y
F094623Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100538112F075492AGGMAEHPDPTRSTGGSSADDTTTDEILAVIAVEEPRGATADQVIRAIGLGLNGEVVQSLLEELVEQGLLDRIGIGHGAVYTLSAMT
Ga0272436_10053817F094623GAGGMSAPPVIHWIERSPYLHEARVTTAAGADLYAGYVAVSPGYDDWRGYVGRGFIPVGMGPRTEMQTAVERRVAEILRHGGEDLHHAS
Ga0272436_10053818F035137GGAGMSGEWERKSDTVWTYRLAGAARPYGSVVQYRDAARSYGDWDATVTAGRLDDDTTIAEGVSFDEARAAIEQHARAAADRVDRADDRGARP
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