NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1005555

Scaffold Ga0272436_1005555


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1005555 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13999
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008598Metagenome330Y
F034417Metagenome174Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100555517F074201AGAAGGMDTVDITPTPEACCQIARLFRVQRADAEALAAQALDTLDTLNDDALAPWGRTLLVAAFEALYEDEHARVRHMDEGLGALGPYADNTGGPDDAS
Ga0272436_100555518F034417AGGAGGMTWTISTPRSVWLAQARDAWDALAPHACKGTELRALAALDRENFALLIEALAALTQGQVSQELRDIAGLRPVGEVLGMPDRGDTRLDADGDAGDW
Ga0272436_10055557F008598GGAMAHLHEDNTTGGVLLAHVTLTTDHITADDIGSLAEALHATGVTVERHTFLPVRGEEQHPWGVLLLATSGPPLPLARLVVPATAPAGVAPALAAALGIGERPAPATLQLKADGVFVSVRGRDLFDITTALNGLPAQLARLDTRREERRLVYSEGRWRVDP
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