NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1005914

Scaffold Ga0272436_1005914


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1005914 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13303
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032884Metagenome178Y
F049323Metagenome146Y
F057010Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0272436_10059141F032884N/AFEKFLNCNEKMTIRNERVEREECEETKKNGSTMTRVERERLYAQTIDVIDQREDIKQRLXPGYM
Ga0272436_100591410F049323N/AMMKEVNEESAEQREEVLRMTXRVQQRCARFKLNIVSXHALIKLIKVRSELXLIQTCS
Ga0272436_100591411F057010N/AMTMKALKKRCKELKARLQAREIISSSSIYFKHSRFQKILDSSLFIDEKNSIWKNXYEKIQNKLKINVDLFSSEXVKLSYVHFRLFNDAAEITQSRRKRDCFNSYKIINELLKELSQLFNDSDKEVNFRRNYYNLIQEQKKFNEFYTQFQXLFFYLDYQEKQLIVDLKNKINSQLXFAXITQLIQLSTLKEICFYLIQLNNDQRAIQEIKNREVMIKARTTKQIIFAEESVKATRRIIEMKMTDQSKLRDAVLTSVKENDLLIENCFLCHKSDHTSKECLNRSFRINALNDEFNCSSNFNSEFDSKN
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