NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1005923

Scaffold Ga0272436_1005923


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1005923 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13295
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016760Metagenome244Y
F029944Metagenome186Y
F074200Metagenome119Y
F102178Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100592314F074200GAGGMARNSQTALYINDPVKIVAGIFTIHQAIYVAGIVLLTYGLINATSRLPYGQSGLGQLHLLLIVGIPALLALLVVTFAGSGTVEPYARQFTGYLWRTTLALPRRLASRAARLARRPRTPRVYGPVLVTDEAGAAPVAERAPVATPIRAVPSVPAPYVAPMVMTTPVAQTQRARLLAWLTAHPCVTDEEIAEGAGMNPSAARPRRRELVEAGLVRKVDLDGRTRAGRRAARWAVVGTPGEVAHG
Ga0272436_100592315F102178N/AMTHATQPPPPAATPAASRVRALGGTVSRVTYPYLLGGGIGYLALTVVSRDLSLMFAGALLVLYGAALSKALQGPSDASERGTDGAQ
Ga0272436_10059235F029944GGAGGMDHRIGGALAYTVDGQGFVLSVREATPPDAAPRLDAAPPVALRTLVAPLTWEPVQRLLAWGAREGMTVAELLDTCRTATRPPATRTPRVRKETRHDVRL
Ga0272436_10059239F016760GGAMSVKNGIKRAARATGRGVYVLAVPKTVRRSTDDLRRVEMSPALGLVLRLAAVLVLAGTVLAVHAVGHPLLGLARNALLLVGAIVMLALSGALAPQGRLLGRLLLVYAKRESARKGLTWQGRLFRALARRLEPATLEKEKGKTNGR
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